Genome Biology

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Growth-rate regulated genes have profound impact on interpretation of transcriptome profiling in Saccharomyces cerevisiae

Birgitte Regenberg, Thomas Grotkjær, Ole Winther, Anders Fausbøll, Mats Åkesson, Christoffer Bro, Lars K Hansen, Søren Brunak and Jens Nielsen*

Genome Biology 2006, 7:R107 doi:10.1186/gb-2006-7-11-r107

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Proceedings   Open Access

Systems biology of lactic acid bacteria: a critical review

Bas Teusink, Herwig Bachmann, Douwe Molenaar Microbial Cell Factories 2011, 10(Suppl 1):S11 (30 August 2011)

Research article   Open Access

Transcriptional regulation of gene expression clusters in motor neurons following spinal cord injury

Jesper Ryge, Ole Winther, Jacob Wienecke, Albin Sandelin, Ann-Charlotte Westerdahl, Hans Hultborn, Ole Kiehn BMC Genomics 2010, 11:365 (9 June 2010)

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Nutrient control of eukaryote cell growth: a systems biology study in yeast

Alex Gutteridge, Pınar Pir, Juan I Castrillo, Philip D Charles, Kathryn S Lilley, Stephen G Oliver BMC Biology 2010, 8:68 (24 May 2010)

In a study on the –omics of yeast cell growth, Stephen Oliver and colleagues measure the response to nutrient deprivation and the global perturbation of the genetic circuitry that accompanies carbon deprivation.

Research article   Open Access

Global transcriptional response of Saccharomyces cerevisiae to the deletion of SDH3

Donatella Cimini, Kiran R Patil, Chiara Schiraldi, Jens Nielsen BMC Systems Biology 2009, 3:17 (6 February 2009)

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Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: A quantitative analysis of a compendium of chemostat-based transcriptome data

Theo A Knijnenburg, Jean-Marc G Daran, Marcel A van den Broek, Pascale AS Daran-Lapujade, Johannes H de Winde, Jack T Pronk, Marcel JT Reinders, Lodewyk FA Wessels BMC Genomics 2009, 10:53 (27 January 2009)

Research article   Open Access

Comparison of the transcriptomic "stress response" evoked by antimycin A and oxygen deprivation in saccharomyces cerevisiae

Liang-Chuan Lai, Matthew T Kissinger, Patricia V Burke, Kurt E Kwast BMC Genomics 2008, 9:627 (23 December 2008)

Research article   Open Access

Transcriptome analysis of a respiratory Saccharomyces cerevisiae strain suggests the expression of its phenotype is glucose insensitive and predominantly controlled by Hap4, Cat8 and Mig1

Nicklas Bonander, Cecilia Ferndahl, Petter Mostad, Martin DB Wilks, Celia Chang, Louise Showe, Lena Gustafsson, Christer Larsson, Roslyn M Bill BMC Genomics 2008, 9:365 (31 July 2008)

Research article   Open Access

Growth rate regulated genes and their wide involvement in the Lactococcus lactis stress responses

Clémentine Dressaire, Emma Redon, Helene Milhem, Philippe Besse, Pascal Loubière, Muriel Cocaign-Bousquet BMC Genomics 2008, 9:343 (21 July 2008)

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Transcription factor control of growth rate dependent genes in Saccharomyces cerevisiae: A three factor design

Alessandro Fazio, Michael C Jewett, Pascale Daran-Lapujade, Roberta Mustacchi, Renata Usaite, Jack T Pronk, Christopher T Workman, Jens Nielsen BMC Genomics 2008, 9:341 (18 July 2008)

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Regulation of xylose metabolism in recombinant Saccharomyces cerevisiae

Laura Salusjärvi, Matti Kankainen, Rabah Soliymani, Juha-Pekka Pitkänen, Merja Penttilä, Laura Ruohonen Microbial Cell Factories 2008, 7:18 (4 June 2008)

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Multilevel regulation of growth rate in yeast revealed using systems biology

Arvind Ramanathan, Stuart L Schreiber Journal of Biology 2007, 6:3 (30 April 2007)