|
Biochemical conversions and transport processes, and number of ORFs associated with the metabolic reactions |
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| Part of metabolism |
Number of metabolic reactions |
Number of previously annotated ORFsa |
Number of newly annotated ORFs |
Total number of ORFs |
|
|
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| Biochemical reactions |
1,095 (681b) |
188 |
468 |
656 |
| C-compound metabolism |
463 (220) |
96 |
166 |
262 |
| Energy metabolism |
20 (17) |
14 |
40 |
54 |
| Aminoacid metabolism |
238 (171) |
40 |
125 |
165 |
| Nucleotide metabolism |
144 (114) |
10 |
44 |
54 |
| Lipid metabolism |
175 (122) |
13 |
97 |
110 |
| Secondary metabolism |
42 (25) |
16 |
14 |
30 |
| Nitrogen and sulphur metabolism |
8 (7) |
2 |
3 |
5 |
| Polymerization, assembly and maintenance |
5 (5) |
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|
|
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| Transport processes |
118 (113) |
6 |
3 |
9 |
|
|
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| Total |
1,213 (794) |
194 |
472 |
666 |
|
Shown are the total number of biochemical conversions and transport processes included in the metabolic reconstruction for A. nidulans (number of unique reactions are given in parenthesis), and the number of ORFs (previously and newly annotated) associated with the metabolic reactions. The total number of unique ORFs in the metabolic network may be different from the sum of the number of ORFs in the different parts of the metabolism, because there are ORFs that encode functions in several parts of the metabolism. aAspergillus nidulans Database [9]. bSix nonenzymatic steps are included. ORF, open reading frame. | ||||
David et al. Genome Biology 2006 7:R108 doi:10.1186/gb-2006-7-11-r108 |
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