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Classification of the genes in each cluster into GO categories |
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| Cluster |
Number of genes in cluster |
Biological processes |
Molecular functions |
|
|
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| Cluster 1 |
280 |
Ribosome biogenesis Cytoplasm organization and biogenesis Ribosome biogenesis and assembly |
RNA binding SnoRNA binding Nucleic acid binding |
| Cluster 2 |
146 |
Alcohol metabolism Monosaccharide metabolism Monosaccharide catabolism |
Translation elongation factor activity Carbohydrate kinase activity Thryptophan synthase activity |
| Cluster 3 |
184 |
Karyogamy Karyogamy during conjugation with cellular fusion Glucan metabolism |
DNA binding Protein kinase regulator activity Kinase regulator activity |
| Cluster 4 |
206 |
Peroxidase activity Oxidoreductase activity, acting on peroxide as acceptor |
|
| Cluster 5 |
92 |
Oxidoreductase activity Pyruvate dehydrogenase activity Pyruvate dehydrogenase (acetyl transferring) activity |
|
| Cluster 6 |
125 |
Generation of precursor metabolites and energy Energy derivation by oxidation of organic compounds Fatty acid β-oxidation |
Oxidoreductase activity Triose-phosphate isomerase activity Allophanate hydrolase activity |
| Cluster 7 |
254 |
Cofactor metabolism Coenzyme metabolism Generation of precursor metabolites and energy |
Hydrogen ion transporter activity Monovalent inorganic cation transporter activity Lyase activity |
| Cluster 8 |
212 |
Protein biosynthesis Cellular biosynthesis Macromolecule biosynthesis |
Structural constituent of ribosome Structural molecule activity Peptidyltransferase activity |
|
The genes in each cluster are classified into GO categories (provided by CADRE), according to the three most important biological processes and molecular functions. The fields with fewer than three categories correspond to cases in which the P values were above the cutoff selected in the GO term analysis. The sum of the number of genes in each cluster is not equal to the total number of differentially expressed genes (1,534) because 35 genes were discarded in the clustering analysis (see Analysis of transcriptome data, under Materials and methods). | |||
David et al. Genome Biology 2006 7:R108 doi:10.1186/gb-2006-7-11-r108 |
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