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Dynamic usage of transcription start sites within core promoters

Hideya Kawaji1*, Martin C Frith23, Shintaro Katayama2*, Albin Sandelin24, Chikatoshi Kai2, Jun Kawai45, Piero Carninci45 and Yoshihide Hayashizaki25

Author Affiliations

1 NTT Software Corporation, 209 Yamashita-cho Nakak-ku, Yokohama, Kanagawa, 231-8551, Japan

2 Genome Exploration Research Group (Genome Network Project Core Group), RIKEN Genomic Sciences Center (GSC), RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan

3 Institute for Molecular Bioscience, University of Queensland, 306 Carmody Road, Brisbane, Queensland 4072, Australia

4 The Bioinformatics Centre, University of Copenhagen, Universitetsparken 15, DK-2100 København Ø, Denmark

5 Genome Science Laboratory, Discovery Research Institute, RIKEN Wako Institute, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan

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Genome Biology 2006, 7:R118  doi:10.1186/gb-2006-7-12-r118

Published: 12 December 2006

Additional files

Additional file 1:

The document includes all of our classifications of the tag clusters and their attributes in tab-delimited format. The first line indicates column names. The nonobvious columns are as follows: symbol, gene symbol associated with the tag cluster, where the associations were extracted from the CAGE Analysis Database [40]; IMPm and IMPf, candidate maternally and paternally imprinted transcripts; TDMbyRLGS, tissue-specific differentially methylated regions identified by Song and coworkers [36].

Format: TXT Size: 583KB Download file

Open Data