Table 3 |
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|
GO terms associated with TE-rich mouse genes |
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|
Over-represented TE types |
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|
|
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|
GO term |
Description |
B1 |
L1 |
LTR |
L2 |
MIR |
B2/ID/B4 |
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|
|
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|
Molecular function |
N |
MCS |
IG |
N |
MCS |
IG |
N |
MCS |
IG |
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|
|
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|
GO:0005215 |
Transporter activity |
- |
- |
- |
64 |
-0.24 |
0.33 |
- |
- |
- |
- |
- |
- |
|
GO:0005216 |
Ion channel activity |
- |
- |
- |
- |
- |
- |
28 |
0.2 |
-0.05 |
- |
- |
- |
|
GO:0015268 |
Alpha-type channel activity |
- |
- |
- |
- |
- |
- |
33 |
0.13 |
0.12 |
- |
- |
- |
|
GO:0015267 |
Channel or pore class transporter activity |
- |
- |
- |
- |
- |
- |
33 |
0.13 |
0.12 |
- |
- |
- |
|
GO:0005261 |
Cation channel activity |
- |
- |
- |
- |
- |
- |
23 |
0.37* |
-0.08 |
- |
- |
- |
|
GO:0005244 |
Voltage-gated ion channel activity |
- |
- |
- |
- |
- |
- |
19 |
0.34 |
-0.1 |
- |
- |
- |
|
Biological process |
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|
GO:0030001 |
Metal ion transport |
- |
- |
- |
- |
- |
- |
26 |
0.31* |
-0.06 |
- |
- |
- |
|
GO:0007264 |
Small GTPase mediated signal transduction |
- |
- |
- |
- |
- |
- |
- |
- |
- |
14 |
-0.14 |
0.79 |
|
|
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|
Significant differences are marked with an asterisk. N, number of contributing genes; MCS, fractional intronic MCS density deviation (see text); IG, fractional igTEna deviation (see text). |
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|
Sironi et al. Genome Biology 2006 7:R120 doi:10.1186/gb-2006-7-12-r120 |
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