Table 3

GO terms associated with TE-rich mouse genes

Over-represented TE types


GO term

Description

B1

L1

LTR

L2

MIR

B2/ID/B4


Molecular function

N

MCS

IG

N

MCS

IG

N

MCS

IG


GO:0005215

Transporter activity

-

-

-

64

-0.24

0.33

-

-

-

-

-

-

GO:0005216

Ion channel activity

-

-

-

-

-

-

28

0.2

-0.05

-

-

-

GO:0015268

Alpha-type channel activity

-

-

-

-

-

-

33

0.13

0.12

-

-

-

GO:0015267

Channel or pore class transporter activity

-

-

-

-

-

-

33

0.13

0.12

-

-

-

GO:0005261

Cation channel activity

-

-

-

-

-

-

23

0.37*

-0.08

-

-

-

GO:0005244

Voltage-gated ion channel activity

-

-

-

-

-

-

19

0.34

-0.1

-

-

-

Biological process

GO:0030001

Metal ion transport

-

-

-

-

-

-

26

0.31*

-0.06

-

-

-

GO:0007264

Small GTPase mediated signal transduction

-

-

-

-

-

-

-

-

-

14

-0.14

0.79


Significant differences are marked with an asterisk. N, number of contributing genes; MCS, fractional intronic MCS density deviation (see text); IG, fractional igTEna deviation (see text).

Sironi et al. Genome Biology 2006 7:R120   doi:10.1186/gb-2006-7-12-r120

Open Data