Genome Biology

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Evolutionary conservation of domain-domain interactions

Zohar Itzhaki, Eyal Akiva, Yael Altuvia and Hanah Margalit*

Genome Biology 2006, 7:R125 doi:10.1186/gb-2006-7-12-r125

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Predicting domain-domain interaction based on domain profiles with feature selection and support vector machines

Alvaro J González, Li Liao BMC Bioinformatics 2010, 11:537 (29 October 2010)

Research article   Open Access

Triangle network motifs predict complexes by complementing high-error interactomes with structural information

Bill Andreopoulos, Christof Winter, Dirk Labudde, Michael Schroeder BMC Bioinformatics 2009, 10:196 (27 June 2009)

Research article   Open Access

Interspecies data mining to predict novel ING-protein interactions in human

Paul MK Gordon, Mohamed A Soliman, Pinaki Bose, Quang Trinh, Christoph W Sensen, Karl Riabowol BMC Genomics 2008, 9:426 (18 September 2008)

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NetGrep: fast network schema searches in interactomes

Eric Banks, Elena Nabieva, Ryan Peterson, Mona Singh Genome Biology 2008, 9:R138 (18 September 2008)

NetGrep is a system for searching protein interaction networks for matches to user-supplied network schemas.

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Interrogating domain-domain interactions with parsimony based approaches

Katia S Guimarães, Teresa M Przytycka BMC Bioinformatics 2008, 9:171 (26 March 2008)

Research article   Open Access

Reuse of structural domain–domain interactions in protein networks

Benjamin Schuster-Böckler, Alex Bateman BMC Bioinformatics 2007, 8:259 (18 July 2007)