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Identification of ciliary and ciliopathy genes in Caenorhabditis elegans through comparative genomics

Nansheng Chen12*, Allan Mah2, Oliver E Blacque23, Jeffrey Chu2, Kiran Phgora2, Mathieu W Bakhoum2, C Rebecca Hunt Newbury4, Jaswinder Khattra4, Susanna Chan4, Anne Go4, Evgeni Efimenko5, Robert Johnsen2, Prasad Phirke5, Peter Swoboda5, Marco Marra6, Donald G Moerman4, Michel R Leroux2, David L Baillie2 and Lincoln D Stein1

Author Affiliations

1 Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA

2 Department of Molecular Biology and Biochemistry, Simon Fraser University, University Drive, Burnaby, British Columbia, Canada V5A 1S6

3 School of Biomolecular and Biomedical Sciences, Conway Institute, University College Dublin, Belfield, Dublin 4, Ireland

4 Department of Zoology, University of British Columbia, West Mall, Vancouver, British Columbia, Canada V6T 1Z4

5 Karolinska Institute, Department of Biosciences and Nutrition, Södertörn University College, School of Life Sciences, S-14189 Huddinge, Sweden

6 British Columbia Cancer Agency, Genome Sciences Centre, Vancouver, British Columbia, Canada V5Z 4S6

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Genome Biology 2006, 7:R126  doi:10.1186/gb-2006-7-12-r126

Published: 22 December 2006

Additional files

Additional data file 1:

These motifs were used as input to generate an HMM profile for finding novel X-box motifs.

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Additional data file 2:

Known and newly identified X-box-regulated genes in C. elegans.

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Additional data file 3:

Affymetrix microarray analysis results.

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Additional data file 4:

Sequencing primers for identifying dyf-5.

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Open Data