Identification of ciliary and ciliopathy genes in Caenorhabditis elegans through comparative genomics

Nansheng Chen¹^,2 , Allan Mah² , Oliver E Blacque²^,3 , Jeffrey Chu² , Kiran Phgora² , Mathieu W Bakhoum² , C Rebecca Hunt Newbury⁴ , Jaswinder Khattra⁴ , Susanna Chan⁴ , Anne Go⁴ , Evgeni Efimenko⁵ , Robert Johnsen² , Prasad Phirke⁵ , Peter Swoboda⁵ , Marco Marra⁶ , Donald G Moerman⁴ , Michel R Leroux² , David L Baillie² and Lincoln D Stein¹

¹Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA

²Department of Molecular Biology and Biochemistry, Simon Fraser University, University Drive, Burnaby, British Columbia, Canada V5A 1S6

³School of Biomolecular and Biomedical Sciences, Conway Institute, University College Dublin, Belfield, Dublin 4, Ireland

⁴Department of Zoology, University of British Columbia, West Mall, Vancouver, British Columbia, Canada V6T 1Z4

⁵Karolinska Institute, Department of Biosciences and Nutrition, Södertörn University College, School of Life Sciences, S-14189 Huddinge, Sweden

⁶British Columbia Cancer Agency, Genome Sciences Centre, Vancouver, British Columbia, Canada V5Z 4S6

author email corresponding author email

Genome Biology 2006, 7:R126doi:10.1186/gb-2006-7-12-r126


Published:	22 December 2006

Subject areas: Genome studies, Bioinformatics

Additional files

Additional data file 1:

These motifs were used as input to generate an HMM profile for finding novel X-box motifs.

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Additional data file 2:

Known and newly identified X-box-regulated genes in C. elegans.

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Additional data file 3:

Affymetrix microarray analysis results.

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Additional data file 4:

Sequencing primers for identifying dyf-5.

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