Table 1

Expression patterns of known and putative X-box containing C. elegans genes revealed by promoter::GFP transgenic analyses
Gene
 Locus
 SAGE
 Microarray
 Previous X-box prediction
 WormBase description/annotation
 Anatomical expression










Blacque et al. [17]
 Efimenko et al. [16]

C02H7.1
 -
 -
 -
 +
 +
 Microtubule-binding protein MIP-T3
 ADF, ADL, AFD, ASG, ASH, ASI, ASJ, ASK, AWB, PHA, PHB, URX [22]; head neurons, amphid, tail neurons, phasmid [17]
C04C3.3*
 -
 -0.15
 0.9
+
 Pyruvate dehydrogenase E1, beta subunit
 Pharynx, body wall muscle, head neurons, tail neurons
C27A7.4
 che-11
 0.21
 3
+
 Intraflagellar transport 140 homolog
 Many, most, all ciliated neurons [16,18,63,64]
C38D4.8
 arl-6 (bbs-3)
 -
 -

ADP-ribosylation factor-like protein 6 (BBS3)
 Head neurons, tail neurons [8]
D1009.5
 dylt-2 (xbx-2)
 0.31
 10.4
 +
 +
 Dynein light chain
 Many, most, all ciliated neurons [16]
F02D8.3
 xbx-1
 -
 22.7
+
 Dynein 2 light intermediate chain, isoform 1
 Many, most, all ciliated neurons [16,65]
F09G2.8*
 -
 0.86
 -

Phospholipase D3, isoform 1
 Pharynx, head neurons
F20D12.3
 bbs-2
 0.89
 -
 +
 +
 Bardet-Biedl syndrome 2 protein
 Many, most, all ciliated neurons [10,16]
F32A6.2*
 -
 0.87
 6
 +
Splice isoform 2 of intraflagellar transport 81
 Head neurons, tail neurons
F38G1.1
 che-2
 0.82
 11
 +
 +
 Intraflagellar transport 80 homolog
 Many, most, all ciliated neurons [6,66]
F40F9.1a
 xbx-6
 -0.41
 -

Fas apoptotic inhibitory molecule 2
 Body wall muscles, pharyngeal muscles, ventral nerve cord, phasmids [16]
F41E7.9*
 -
 -
 -
+
 Mitogen-activated protein kinase kinase kinase kinase 4 isoform 2
 Head neurons, tail neurons, hypodermis
K07G5.3
 -
 -
 22.6
 +
C2 Ca2+-binding motif-containing protein
 Head neurons, tail neurons [17]
M04C9.5*
 dyf-5†
 -
 5.3
+
 Serine/threonine-protein kinase MAK
 Amphids and phasmids
R01H10.6
 bbs-5
 0.95
 4.6
 +
 +
 Bardet-Biedl Syndrome 5 protein
 Many, most, all ciliated neurons [9,16]
R31.3
 osm-6
 -0.11
 34
 +
 +
 Intraflagellar transport 52 homolog
 Many, most, all ciliated neurons [6,67]
T25F10.5
 bbs-8
 0.46
 7.7
+
 Bardet-Biedl Syndrome 8 protein
 Many, most, all ciliated neurons [10,16,18]
T27B1.1
 osm-1
 -
 4.3
 +
 +
 Predicted intraflagellar transport raft protein
 Many, most, all ciliated neurons [6,68]
Y105E8A.5
 bbs-1
 0.56
 5.3
 +
 +
 Bardet-Biedl syndrome 1 protein
 Many, most, all ciliated neurons [10,16]
Y110A7A.20*
 -
 -
 -
+
 Intraflagellar transport protein 20 homolog
 Head neurons, tail neurons [17]
Y37D8A.17
 -
 -
 -
+
 Uncharacterized integral membrane protein
 Pharynx
Y41G9A.1
 osm-5
 0.58
 5.3
 +
 +
 Tg737/IFT88 protein
 Many, most, all ciliated neurons [10,16,69]
Y69A2AR.2a*
 ric-8
 -0.21
 -

Signaling protein RIC-8/synembryn
 Amphids and phasmids
Y75B8A.12
 osm-12 (bbs-7)
 -
 2.1
+
 Bardet-Biedl Syndrome 7 protein
 Many, most, all ciliated neurons [10,16]
ZK520.3
 dyf-2†
 -
 16.6

WD repeat membrane protein
 Amphids, tail neurons [23]

*Genes in these rows are uncharacterized X-box containing genes. †Connections between gene names (for example, M04C9.5) and locus names (for example, dyf-5) were made in this project. The unreferenced expression data were taken from the C. elegans Gene Expression Consortium database [33].

Chen et al. Genome Biology 2006 7:R126   doi:10.1186/gb-2006-7-12-r126

Open Data