Table 2

C. elegans genes that contain X-box motifs in their promoters, are positively correlated with daf-19 in gene expression, and have reduced expression in daf-19(-) strains

C. elegans gene

Locus

SAGE

Microarray

Human

Human genomic coordinates (chromosome:start..end)

Cytogenetic

Description

C18H9.8

-

0.43

5

ENSP00000262247

9:26946410..27052802

9p21.2

Intraflagellar transport 74 homolog

C48B6.8

(bbs-9)

0.75

43.5

ENSP00000313122

7:32942414..33418920

7p14.3

Bardet-Biedl syndrome 9 protein

E04A4.6

-

0.97

81.7

ENSP00000265993

10:97413166..97443890

10q24.1

Hypothetical protein C10orf61

F20D12.3

bbs-2

0.89

6.8

ENSP00000245157

16:55075801..55111696

16q12.2

Bardet-Biedl syndrome 2 protein

F32A6.2

-

0.87

6

ENSP00000355372

12:109024940..109118751

12q24.11

Intraflagellar transport 81 homolog

F38G1.1

che-2

0.82

11

ENSP00000312778

3:161457490..161600022

3q25.33

Intraflagellar transport 80 homolog

R01H10.6

bbs-5

0.95

4.6

ENSP00000295240

2:170161500..170188671

2q31.1

Bardet-Biedl syndrome 5

T25F10.5

bbs-8

0.46

7.7

ENSP00000339486

14:88360731..88414084

14q32.11

Bardet-Biedl syndrome 8 protein

T28F3.6

Ifta-2

0.83

10.3

ENSP00000320359

7:100550084..100558512

7q22.1

RAB5-like protein

Y41G9A.1

osm-5

0.58

5.3

ENSP00000323580

13:20038585..20163314

13q12.11

Tg737/IFT88 protein

ZK418.3

-

0.46

12.2

ENSP00000335094

2:62639421..62645127

2p15

Transmembrane protein 17

daf-19 gene expression was as ascertained by SAGE. Reduced expression in daf-19(-) strains was determined by microarray.

Chen et al. Genome Biology 2006 7:R126   doi:10.1186/gb-2006-7-12-r126