Genome Biology

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Alternate transcription of the Toll-like receptor signaling cascade

Christine A Wells1,2*, Alistair M Chalk1,3, Alistair Forrest2, Darrin Taylor2, Nic Waddell2, Kate Schroder2, S Roy Himes2, Geoffrey Faulkner2, Sandra Lo1, Takeya Kasukawa4, Hideya Kawaji4, Chikatoshi Kai4, Jun Kawai4,5, Shintaro Katayama4, Piero Carninci4, Yoshihide Hayashizaki4,5, David A Hume2,6 and Sean M Grimmond2

Author Affiliations

1 Eskitis Institute for Cell and Molecular Therapies, School of Biological and Biomedical Sciences, Griffith University, Brisbane 4111, Australia

2 The Institute for Molecular Biosciences, The University of Queensland, Brisbane 4072, Australia

3 Karolinska Institutet, S-171 77 Stockholm, Sweden

4 Genome Exploration Research Group (Genome Network Project Core Group), RIKEN Genomic Sciences Center, RIKEN Yokohama Institute, Yokohama, Kanagawa 230-0045, Japan

5 Genome Science Laboratory, Discovery Research Institute, RIKEN Wako Institute, Wako, Saitama 351-0198, Japan

6 The Special Research Centre for Functional and Applied Genomics, The University of Queensland, St Lucia, 4072, Australia

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Genome Biology 2006, 7:R10 doi:10.1186/gb-2006-7-2-r10

Published: 17 February 2006

Additional files

Additional File 1:

A csv file showing each transcript variant for the Tlr pathway, the splicing array probe sequences, and their genomic coordinates.

Format: CSV Size: 302KB Download file

Open Data

Additional File 2:

A gff track of each splicing array probe for annotation of genome viewers.

Format: GFF Size: 89KB Download file

Open Data

Additional File 3:

A text file showing all of the raw data from the four replica splicing array experiments.

Format: TXT Size: 410KB Download file

Open Data

Additional File 4:

A text file showing the Tlr database data, which may also be visualized and searched from our macrophages website [44] (these data include the full analysis of each predicted variant protein and links to a genome viewer with probe tracks overlayed as gff).

Format: TXT Size: 245KB Download file

Open Data