Table 3

A core complement of exported proteins is conserved across Plasmodium

Chromosome

Accession number

Exons

Transmembrane domain

Microarray data

Orthologs

Comments


R

T

S

M

SP

G

Pv

Pk

Py

Pb

Pc

Pg


1

PFA0210c

1

0

7.42

8.70

10.16

10.65

7.88

4.28

X

X

X

X

PFA0585w

1

0

2.99

3.07

3.06

2.99

3.06

3.05

X

X

X

X

PFA0610c

2 cl

0

2.65

2.71

2.70

2.65

2.70

2.69

X

X

X

X

X

X

Hyp11

2

PFB0105c

2 cl

0

9.26

4.41

10.29

12.28

12.77

2.31

X

PHISTc

PFB0110w

2 cl

0

3.37

3.48

3.48

3.40

3.47

3.46

X

Hyp11

PFB0900c

2 cl

0

6.22

3.21

3.23

8.00

3.21

3.20

X

X

PHISTc

PFB0905c

2 cl

0

3.26

3.27

3.26

6.34

3.27

3.26

X

X

PHISTc

PFB0910w

2 cl

2

2.73

2.80

2.79

3.72

2.80

2.78

X

X

PFB0915w

2 cl

1

5.17

3.43

3.97

6.30

3.42

3.40

X

X

LZ

3

PFC0075c

2 cl

0

3.13

3.21

3.20

3.15

3.20

3.19

X

X

1 SNP

PFC0090w

2 cl

1

6.51

3.22

6.31

10.36

3.25

3.20

X

X

X

X

X

1 SNP

4

PFD0495c

2 cl

1

2.63

2.69

2.68

2.76

2.69

2.67

X

X

X

X

X

X

5

PFE0055c

2 cl+2

0

2.37

2.37

2.35

8.07

2.37

2.36

X

X

DNAj typeI

PFE1595c

2 cl

0

2.64

2.70

2.69

2.65

2.69

2.69

X

PHISTc

7

MAL7P1.172

2 cl

0

9.65

6.52

5.03

9.47

3.62

3.60

X

PHISTc

8

MAL8P1.4

2 cl

0

5.46

3.35

3.34

3.49

3.35

3.33

X

PHISTc

PF08_0137

2 cl

0

6.80

7.06

4.16

6.55

4.14

4.13

X

X

X

X

PHISTc

9

PFI1725w

2 cl

0

3.84

3.36

3.35

5.47

3.36

3.33

X

X

PFI1750c

2 cl

0

2.71

7.53

2.68

2.64

2.68

2.67

X

X

X

Hyp11

PFI1755c

2 cl

0

12.20

9.89

9.11

11.33

3.24

3.22

X

PFI1760w

2 cl

0

9.44

7.41

4.00

9.63

3.83

7.03

X

PFI1780w

2 cl

0

8.72

6.92

3.15

3.13

3.15

3.14

X

X

PHISTc

10

PF10_0021

2 cl

0

6.01

3.51

3.84

5.38

3.50

3.49

X

PHISTc

PF10_0022

2 cl

0

3.00

3.02

3.00

3.18

3.02

3.00

X

PHISTc

PF10_0023

2 cl

2

3.12

3.19

3.18

3.13

3.17

3.16

X

X

Hyp16

PF10_0025

2 cl

1

8.65

2.84

3.64

10.34

2.86

2.85

X

X

Hyp16

PF10_0161

2 cl

0

2.60

2.66

2.65

2.61

2.68

2.65

X

PHISTc

PF10_0162

2 cl

0

3.41

3.50

3.50

3.78

3.49

3.48

X

X

PHISTc

PF10_0163

2 cl

0

5.26

3.96

3.95

7.43

4.01

3.90

X

X

PHISTc

11

PF11_0503

2 cl

0

7.08

3.09

3.06

3.04

3.08

3.07

X

X

PHISTc

PF11_0504

2 cl

0

3.50

3.55

3.55

3.51

3.55

3.54

X

X

Hyp11

12

PFL0045c

2 cl

0

3.14

3.21

3.20

3.18

3.20

3.18

X

PHISTc

PFL0600w

1

0

3.07

3.16

3.22

3.08

3.22

3.14

X

X

X

PFL1660c

2 cl+2

0

2.49

2.55

2.53

2.51

2.55

2.53

X

X

X

13

PF13_0076

2 cl

1

6.85

6.35

3.76

6.28

3.73

3.73

X

14

PF14_0731

2 cl

0

8.53

8.62

3.42

3.34

3.53

3.41

X

PHISTc


For each conserved exported protein, this table presents exon structure, number of predicted transmembrane domains, protein localisation (where available), microarray expression (abbreviations same as in Table 2), conservation across the genus, and associated family. The text 'cl' in the exon column indicates a classic PEXEL structure with signal sequence in the first exon and PEXEL at the beginning of the second. For the microarray data group of columns, expression values for each member of the core list are presented. Values over 5 (indicating expression) in microarray data are highlighted in bold. Ortholog presence in other Plasmodium species is indicated by an X in the appropriate column of the Ortholog column group (Pv, P. vivax; Pk, P. knowlesi; Py, P. yoelii; Pb, P. berghei; Pc, P. chabaudi; Pg,P. gallinaceum). PlasmoDB IDs of genes conserved outside of the P. vivax and P. falciparum lineages are presented in bold.

Sargeant et al. Genome Biology 2006 7:R12   doi:10.1186/gb-2006-7-2-r12

Open Data