Table 3 |
|||||
|
Frequency of individual repetitive elements in D. virilis |
|||||
|
Repeat element |
Class |
Number |
Average size (bp) |
Largest size (bp) |
Percent of total repeats |
|
|
|||||
|
Ten most frequent repeat types (D. virilis dot) |
|||||
|
dvir.16.2.centroid |
DNA |
94 |
178 |
1,071 |
23.4 |
|
Penelope |
LINE |
35 |
199 |
427 |
9.8 |
|
dvir.2.37.centroid |
LTR |
1 |
6,832 |
6,832 |
9.6 |
|
dvir.0.85.centroid |
LINE |
8 |
764 |
3,711 |
8.6 |
|
dvir.11.33.centroid |
Tandem Repeat |
31 |
191 |
615 |
8.3 |
|
dvir.5.67.centroid |
LTR |
1 |
5,406 |
5,406 |
7.6 |
|
dvir.7.88.centroid |
LINE |
1 |
3,370 |
3,370 |
4.7 |
|
dvir.16.17.centroid |
DNA |
15 |
207 |
739 |
4.3 |
|
dvir.11.23.centroid |
Tandem Repeat |
13 |
186 |
430 |
3.4 |
|
dvir.22.25.centroid |
Unknown |
6 |
391 |
669 |
3.3 |
|
Other |
16.9 |
||||
|
Ten most frequent repeat types (D. melanogaster dot) |
|||||
|
DNAREP1_DM (DINE-1) |
DNA |
126 |
201 |
631 |
34.5 |
|
yakuba_cons (DINE-1) |
DNA |
54 |
170 |
722 |
12.4 |
|
FB4_DM |
DNA |
8 |
630 |
1,215 |
6.8 |
|
PROTOP |
DNA |
5 |
938 |
3,615 |
6.4 |
|
PROTOP_A (1360) |
DNA |
9 |
518 |
1,111 |
6.3 |
|
DMCR1A |
LINE |
8 |
528 |
1,253 |
5.7 |
|
PROTOP_B |
DNA |
14 |
221 |
1,083 |
4.2 |
|
TC1_DM (Tc1) |
DNA |
8 |
343 |
990 |
3.7 |
|
TART |
LINE |
5 |
520 |
663 |
3.5 |
|
BARI1_DM (Bari) |
DNA |
1 |
1,728 |
1,728 |
2.3 |
|
Other |
14.0 |
||||
|
|
|||||
|
Slawson et al. Genome Biology 2006 7:R15 doi:10.1186/gb-2006-7-2-r15 |
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