Table 2 |
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|
Number of raw sequences, selected ESTs, sizes, contigs formed, and redundancy in A. pisum EST database |
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|
Biological source |
Library |
EST |
Rejected |
Selected |
M bp |
Contig |
Singletons |
Redundancy |
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|
|
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|
Bacterial |
rRNA |
Short sequences |
Vector sequences |
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|
|
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|
Antennae |
ApAL3SD |
1,031 |
10 |
39 |
84 |
0 |
898 |
398 |
305 |
283 |
34.52 |
|
ID0AEE |
5,424 |
23 |
431 |
46 |
1 |
4,923 |
622 |
1,037 |
2,414 |
29.90 |
|
|
Bacteriocyte |
ApBac |
2,345 |
1 |
0 |
3 |
0 |
2,341 |
871 |
275 |
40 |
86.54 |
|
Digestive tract |
ApDT |
1,184 |
52 |
333 |
94 |
0 |
705 |
403 |
267 |
211 |
32.20 |
|
ApHL3LD |
1,245 |
24 |
30 |
359 |
0 |
832 |
394 |
366 |
201 |
31.85 |
|
|
Head |
ApHL3SD |
2,068 |
7 |
33 |
739 |
0 |
1,289 |
363 |
382 |
438 |
36.38 |
|
ID0ACC |
10,706 |
3 |
902 |
221 |
3 |
9,577 |
574 |
2,012 |
1,564 |
62.66 |
|
|
Parthenogenetic embryo |
ID0ADD |
5,473 |
136 |
541 |
105 |
0 |
4,691 |
717 |
210 |
151 |
92.30 |
|
Whole body, multistage |
ApMS; 14419; 14436 |
17,964 |
479 |
1455 |
382 |
0 |
15,648 |
716 |
5153 |
3027 |
47.72 |
|
GenBank |
mRNA |
3 |
0 |
0 |
0 |
0 |
3 |
1220 |
2 |
1 |
0.00 |
|
Total |
47,443 |
735 |
3,764 |
2,033 |
4 |
40,907 |
628 |
4,300 |
7,782 |
70.46 |
|
|
|
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|
M bp: mean size of ESTs in base pairs. |
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|
Sabater-Muñoz et al. Genome Biology 2006 7:R21 doi:10.1186/gb-2006-7-3-r21 |
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