Table 2 |
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|
Significantly enriched GO terms in transcript groups |
|||
|
GO term |
Number in test group |
Number in reference group |
GO description |
|
|
|||
|
Anther-specific (667) |
|||
|
16,538 |
7 |
2 |
Cyclin-dependent protein kinase regulator activity |
|
6,139 |
120 |
591 |
Nucleobase, nucleoside, nucleotide and nucleic acid metabolism |
|
6,270 |
5 |
1 |
DNA replication initiation |
|
Pollen-specific (165) |
|||
|
30,599 |
9 |
10 |
Pectinesterase activity |
|
4,857 |
10 |
23 |
Enzyme inhibitor activity |
|
16,787 |
54 |
789 |
Hydrolase activity |
|
31,410 |
39 |
513 |
Cytoplasmic vesicle |
|
16,023 |
39 |
513 |
Cytoplasmic membrane-bound vesicle |
|
16,789 |
10 |
38 |
Carboxylic ester hydrolase activity |
|
4,553 |
12 |
62 |
Hydrolase activity, hydrolyzing O-glycosyl compounds |
|
45,045 |
39 |
547 |
Secretory pathway |
|
46,903 |
39 |
550 |
Secretion |
|
16,798 |
12 |
69 |
Hydrolase activity, acting on glycosyl bonds |
|
5,576 |
8 |
28 |
Extracellular region |
|
42,545 |
4 |
2 |
Cell wall modification |
|
6,810 |
57 |
1,063 |
Transport |
|
51,234 |
57 |
1,065 |
Establishment of localization |
|
3,779 |
6 |
16 |
Actin binding |
|
51,179 |
57 |
1,068 |
Localization |
|
8,092 |
7 |
25 |
Cytoskeletal protein binding |
|
30,234 |
10 |
65 |
Enzyme regulator activity |
|
45,330 |
3 |
1 |
Aspartyl esterase activity |
|
7,010 |
10 |
68 |
Cytoskeleton organization and biogenesis |
|
3,824 |
94 |
2,170 |
Catalytic activity |
|
5,618 |
6 |
22 |
Cell wall |
|
30,312 |
6 |
24 |
External encapsulating structure |
|
8,150 |
136 |
3,596 |
Biological_process |
|
30,036 |
5 |
16 |
Actin cytoskeleton organization and biogenesis |
|
Leaf-specific (490) |
|||
|
9,536 |
152 |
1,073 |
Plastid |
|
19,825 |
5 |
3 |
Oxygen binding |
|
Expressed in all three tissue types (1,091) |
|||
|
12,505 |
29 |
43 |
Endomembrane system |
|
Differentially expressed, ND101/W23 pollen versus W23 pollen (47) |
|||
|
43,067 |
4 |
28 |
Regulation of programmed cell death |
|
42,981 |
4 |
28 |
Regulation of apoptosis |
|
6,916 |
3 |
12 |
Anti-apoptosis |
|
43,069 |
3 |
14 |
Negative regulation of programmed cell death |
|
43,066 |
3 |
14 |
Negative regulation of apoptosis |
|
Differentially expressed, ND101/W23 juvenile leaf versus W23 juvenile leaf (158) |
|||
|
16,491 |
22 |
304 |
Oxidoreductase activity |
|
9,507 |
15 |
169 |
Chloroplast |
|
9,579 |
7 |
40 |
Thylakoid |
|
|
|||
|
Only transcripts that showed detectable expression in all three lines were considered. The number of transcripts with GO terms assigned for each test group is shown in parentheses following the group description. The reference group comprises the rest of the transcriptome. The p values for each GO term are: p < 0.0005 for single testing, FWER adjusted p < 0.1 and FDR < 0.1. See Materials and methods for details. |
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|
Ma et al. Genome Biology 2006 7:R22 doi:10.1186/gb-2006-7-3-r22 |
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