Table 1 |
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|
Comparison of ReAnoCDS05 and Ensembl |
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| ReAnoCDS05 |
Ensembl |
|
|
|
||
| Total CDSs |
31,254 |
16,148 |
| Total exons |
155,680 |
58,579 |
| Average exons per CDS |
4.98 |
3.62 |
| CDS completion rate* |
96% |
37% |
| CDSs overlapped by cDNA pair contigs† |
1,885 |
2,257 |
| CDSs perfectly matched to cDNA pair contigs† |
752 |
672 |
| cDNA pair contigs not overlapping any CDSs† |
1% |
8% |
| Specificity (nucleotide)‡ |
0.96 |
0.99 |
| Sensitivity (overall)§ |
99% |
92% |
| Sensitivity (perfect)¶ |
45% |
30% |
| Protein hits yielded by MS peptides |
4,737 |
1,413 |
| MS peptide missing rate¥ |
12% |
62% |
|
|
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|
*Proportion of CDSs with start and stop codon. †Paired end sequences of full-length cDNAs from [7]. ‡Calculation for ReAnoCDS05 described in Materials and methods, Ensembl value from [18]. §Proportion of cDNA pair contigs overlapping a CDS. ¶Proportion of overlapped CDSs precisely matching cDNA pair contig boundaries. ¥Proportion of mass spectrometry (MS) peptides failing to hit any protein in database. |
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|
Li et al. Genome Biology 2006 7:R24 doi:10.1186/gb-2006-7-3-r24 |
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