Genome Biology
Volume 7
Issue 4 |
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  SoftwareReference based annotation with GeneMapperSourav Chatterji1  and Lior Pachter2  1Department of Computer Science, University of California at Berkeley, Berkeley, CA, 94720, USA 2Department of Mathematics, University of California at Berkeley, Berkeley, CA 94720, USA  author email corresponding author email
Genome Biology 2006,
7:R29doi:10.1186/gb-2006-7-4-r29
Subject areas: Bioinformatics, Genome studies Abstract
We introduce GeneMapper, a program for transferring annotations from a well annotated genome to other genomes. Drawing on high quality curated annotations, GeneMapper enables rapid and accurate annotation of newly sequenced genomes and is suitable for both finished and draft genomes. GeneMapper uses a profile based approach for mapping genes into multiple species, improving upon the standard pairwise approach. GeneMapper is freely available for academic use. | 
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