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Benchmarking ortholog identification methods using functional genomics data

Tim Hulsen1, Martijn A Huynen1, Jacob de Vlieg12 and Peter MA Groenen2*

Author Affiliations

1 Centre for Molecular and Biomolecular Informatics, Nijmegen Centre for Molecular Life Sciences, Radboud University Nijmegen, Toernooiveld 1, Nijmegen, 6500 GL, The Netherlands

2 NV Organon, Molenstraat 110, Oss, 5340 BH, The Netherlands

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Genome Biology 2006, 7:R31  doi:10.1186/gb-2006-7-4-r31

Published: 13 April 2006

Additional files

Additional File 1:

All end data used to create the figures.

Format: XLS Size: 44KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional File 2:

All of the protein pairs that are considered to be 'true orthologs' within our ortholog reference set, consisting of several protein families. The first column contains the name of the protein family, the second the human gene names and the third the mouse/worm gene names. The fourth column contains the corresponding human 'Protein World' entries, whereas the fifth column contains the mouse/worm entries. The last columns contain the orthologous protein pairs.

Format: XLS Size: 129KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data