Method
A classification based framework for quantitative description of large-scale microarray data
1 Department of Chemical Engineering and Materials Science, University of Minnesota, Saint Paul, MN 55108, USA
2 Biotechnology Institute, University of Minnesota, Saint Paul, MN 55108, USA
3 Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Saint Paul, MN 55108, USA
Genome Biology 2006, 7:R32 doi:10.1186/gb-2006-7-4-r32
Published: 20 April 2006Additional files
Additional File 1:
Figure S1. Ribosomal and Heat shock genes; Figure S2. Drug (DNA damaging) comparisons; Figure S3. Norfloxacin treatment in resistant strains; Figure S4: Profile of RpoS subgroup in all conditions; Figure S5. Signature classes in LB recovery conditions; Figure S6. Growth conditions comparison; Figure S7. Drug (non-DNA damaging) comparisons; Figure S8. Simulated expression profiles for comparison of methods
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Additional File 2:
Scores of top classes in antibiotic and radiation treatments
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Additional File 3:
Top class scores in growth and recovery conditions
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Additional File 4:
Comparison of results obtained from entropy reduction and SA
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Additional File 5:
Classes and corresponding genes used in the analysis
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Additional File 6:
Description of SVD and the method of entropy calculation
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Additional File 8:
Conditions used in this analysis and their descriptions
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Additional File 9:
Sample data files are in a compressed (zip) format
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