Table 1 |
||||||
|
Human amino acid repeat variants |
||||||
| Repeat type |
Number of repeats with EST coverage* |
Average codon homogeneity |
Average number of ESTs |
Polymorphic repeats (%) |
Polymorphic up-down (%)† |
Gap/total repeat variants (%)‡ |
|
|
||||||
| All |
2,227 |
0.49 |
27.4 |
115 (5.2) |
110-106 (4.8) |
60/137 (44%) |
| A |
249 |
0.37 |
35.5 |
14 (5.6) |
16-9 (5) |
8/17 (47%) |
| E |
487 |
0.55 |
28.8 |
31 (6.4) |
20-20 (4.1) |
15/35 (43%) |
| G |
193 |
0.48 |
27.7 |
12 (6.2) |
13-12 (6.5) |
4/15 (26%) |
| L |
210 |
0.55 |
26.8 |
5 (2.4) |
11-13 (5.7) |
4/5 (80%) |
| P |
312 |
0.41 |
26.8 |
17 (5.4) |
17-17 (5.4) |
3/22 (14%) |
| S |
315 |
0.41 |
22.7 |
9 (2.9) |
10-8 (2.8) |
2/11 (18%) |
| K |
134 |
0.5 |
36.9 |
7 (5.2) |
6-10(5.9) |
3/7 (43%) |
| Q |
137 |
0.66 |
19.7 |
14 (10.2) |
8-9 (6.2) |
15/17 (88%) |
|
|
||||||
|
*Number of repeats covered by at least four ESTs. †Number of polymorphic sequences immediately upstream (up) and downstream (down) of repeats; the percentages in parentheses were calculated by taking them together. ‡Number of repeat polymorphic variants involving gaps with respect to the total number of variants. |
||||||
|
Mularoni et al. Genome Biology 2006 7:R33 doi:10.1186/gb-2006-7-4-r33 |
||||||
