Table 2

Amino acid substitutions in polymorphic variants
From/to
 A
 E
 G
 L
 P
 S
 K
 Q
 V
 I
 M
 F
 W
 T
 C
 Y
 N
 D
 R
 H
 Total
Substitutions within repeats




















A
 0
 0
 1
 0
 1
 1
 0
 0
 5
 0
 0
 0
 0
 1
 0
 0
 0
 0
 0
 0
 9
E
 0
 0
 4
 0
 0
 0
 8
 3
 1
 0
 0
 0
 0
 0
 0
 0
 0
 5
 0
 0
 21
G
 2
 2
 0
 0
 0
 4
 0
 0
 0
 0
 0
 0
 0
 0
 2
 0
 0
 0
 3
 0
 13
L
 0
 0
 0
 0
 0
 1
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 1
P
 7
 0
 0
 1
 0
 2
 0
 0
 0
 0
 0
 0
 0
 7
 0
 0
 0
 0
 2
 1
 20
S
 0
 0
 3
 0
 1
 0
 0
 0
 0
 0
 0
 3
 0
 1
 0
 0
 1
 0
 0
 0
 9
K
 0
 0
 0
 0
 0
 0
 0
 3
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 1
 0
 4
Q
 0
 0
 0
 0
 1
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 1
 2
Total
 9
 2
 8
 1
 3
 8
 8
 6
 6
 0
 0
 3
 0
 9
 2
 0
 1
 5
 6
 2
 79
Rel. frequency
 0.11
 0.03
 0.10
 0.01
 0.04
 0.10
 0.10
 0.08
 0.08
 0.00
 0.00
 0.04
 0.00
 0.11
 0.03
 0.00
 0.01
 0.06
 0.08
 0.03






















Substitutions in repeat adjacent sequences*




















A
 0
 0
 6
 0
 4
 3
 0
 0
 5
 0
 0
 0
 0
 1
 0
 0
 0
 2
 0
 0
 21
E
 0
 0
 1
 0
 0
 0
 5
 2
 1
 0
 0
 0
 0
 0
 0
 0
 0
 4
 0
 0
 13
G
 6
 2
 0
 0
 0
 2
 0
 0
 7
 0
 0
 0
 0
 0
 3
 0
 0
 1
 5
 0
 26
L
 0
 0
 0
 0
 1
 2
 0
 0
 4
 0
 4
 1
 2
 0
 1
 0
 0
 0
 0
 0
 15
P
 8
 0
 0
 2
 0
 6
 0
 3
 0
 1
 0
 0
 0
 3
 0
 0
 0
 0
 0
 1
 24
S
 0
 0
 2
 2
 2
 0
 0
 0
 0
 0
 0
 5
 0
 1
 0
 0
 0
 0
 1
 0
 13
K
 0
 3
 0
 0
 0
 0
 0
 2
 0
 1
 0
 0
 0
 1
 0
 0
 3
 0
 1
 0
 11
Q
 0
 1
 0
 3
 1
 0
 2
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 3
 3
 12
Total
 14
 6
 9
 7
 7
 13
 7
 7
 17
 2
 4
 6
 2
 6
 4
 0
 3
 7
 10
 4
 135
Rel. frequency
 0.10
 0.04
 0.07
 0.05
 0.05
 0.10
 0.05
 0.05
 0.13
 0.01
 0.03
 0.04
 0.01
 0.04
 0.03
 0.00
 0.02
 0.05
 0.07
 0.03

*Upstream and downstream sequences taken together. Rel. frequency, relative frequency.

Mularoni et al. Genome Biology 2006 7:R33   doi:10.1186/gb-2006-7-4-r33

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