Research article  

A proteogenomic analysis of Shigella flexneri using 2D LC-MALDI TOF/TOF

Lina Zhao, Liguo Liu, Wenchuan Leng, Candong Wei, Qi Jin BMC Genomics 2011, 12:528 (28 October 2011)

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Research  

The utility of mass spectrometry-based proteomic data for validation of novel alternative splice forms reconstructed from RNA-Seq data: a preliminary assessment

Kang Ning, Alexey I Nesvizhskii BMC Bioinformatics 2010, 11(Suppl 11):S14 (14 December 2010)

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Research article  

LC-MS/MS-based proteome profiling in Daphnia pulex and Daphnia longicephala: the Daphnia pulex genome database as a key for high throughput proteomics in Daphnia

Thomas Fröhlich, Georg J Arnold, Rainer Fritsch, Tobias Mayr, Christian Laforsch BMC Genomics 2009, 10:171 (21 April 2009)

This article is part of a collection on Daphnia: the companion...

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Database  

The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation

Sandra N Loevenich, Erich Brunner, Nichole L King, Eric W Deutsch, Stephen E Stein, Ruedi Aebersold, Ernst Hafen BMC Bioinformatics 2009, 10:59 (11 February 2009)

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Research article  

Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger

James C Wright, Deana Sugden, Sue Francis-McIntyre, Isabel Riba-Garcia, Simon J Gaskell, Igor V Grigoriev, Scott E Baker, Robert J Beynon, Simon J Hubbard BMC Genomics 2009, 10:61 (4 February 2009)

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Methodology article  

A compatible exon-exon junction database for the identification of exon skipping events using tandem mass spectrum data

Fan Mo, Xu Hong, Feng Gao, Lin Du, Jun Wang, Gilbert S Omenn, Biaoyang Lin BMC Bioinformatics 2008, 9:537 (16 December 2008)

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Research article  

Overcoming function annotation errors in the Gram-positive pathogen Streptococcus suis by a proteomics-driven approach

Manuel J Rodríguez-Ortega, Inmaculada Luque, Carmen Tarradas, José A Bárcena BMC Genomics 2008, 9:588 (5 December 2008)

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Research  

The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation

Dong Xia, Sanya J Sanderson, Andrew R Jones, Judith H Prieto, John R Yates, Elizabeth Bromley, Fiona M Tomley, Kalpana Lal, Robert E Sinden, Brian P Brunk, David S Roos, Jonathan M Wastling Genome Biology 2008, 9:R116 (21 July 2008)

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Method  

A mouse plasma peptide atlas as a resource for disease proteomics

Qing Zhang, Rajasree Menon, Eric W Deutsch, Sharon J Pitteri, Vitor M Faca, Hong Wang, Lisa F Newcomb, Ronald A DePinho, Nabeel Bardeesy, Daniela Dinulescu, Kenneth E Hung, Raju Kucherlapati, Tyler Jacks, Katerina Politi, Ruedi Aebersold, Gilbert S Omenn, David J States, Samir M Hanash Genome Biology 2008, 9:R93 (3 June 2008)

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