Table 2

A representative set of peptide containing genes

HUGO gene ID
Ensembl gene ID
PT
PM
IE
OE
NE
Gene description

-
ENSG00000198209
28
26
0
2
0
Complement component 4B preproprotein
A1BG
ENSG00000121410
19
19
0
0
0
Alpha-1B-glycoprotein precursor (Alpha-1-B glycoprotein)
A2M
ENSG00000175899
47
46
0
0
1
Alpha-2-macroglobulin precursor (Alpha-2-M)
AFM
ENSG00000079557
12
11
0
0
1
Afamin precursor (Alpha-albumin; Alpha-Alb)
AGT
ENSG00000135744
21
21
0
0
0
Angiotensinogen precursor (contains angiotensin I (Ang I); angiotensin II (Ang II); angiotensin III (Ang III) (Des-Asp[1]-angiotensin II)).
AHSG
ENSG00000145192
24
24
0
0
0
Alpha-2-HS-glycoprotein precursor (Fetuin-A; Alpha-2-Z-globulin; Ba-alpha-2-glycoprotein)
ALB
ENSG00000163631
111
108
0
3
0
Serum albumin precursor
ANKRD24
ENSG00000089847
7
0
5
2
0
F20887_1, partial CDS (fragment)
APC2
ENSG00000115266
9
0
5
0
4
Adenomatosis polyposis coli 2
APCS
ENSG00000132703
11
11
0
0
0
Serum amyloid P-component precursor (SAP; 9.5S alpha-1-glycoprotein; contains serum amyloid P-component(1-203))
APOA1
ENSG00000118137
53
52
0
1
0
Apolipoprotein A-I precursor (Apo-AI; ApoA-I; contains apolipoprotein A-I(1-242))
APOA2
ENSG00000158874
17
15
0
2
0
Apolipoprotein A-II precursor (Apo-AII; ApoA-II; contains apolipoprotein A-II(1-76))
APOB
ENSG00000084674
112
110
0
2
0
Apolipoprotein B-100 precursor (Apo B-100; contains apolipoprotein B-48 (Apo B-48))
APOC3
ENSG00000110245
4
4
0
0
0
Apolipoprotein C-III precursor (Apo-CIII; ApoC-III)
APOE
ENSG00000130203
13
13
0
0
0
Apolipoprotein E precursor (Apo-E)
APOF
ENSG00000175336
4
4
0
0
0
Apolipoprotein F precursor (Apo-F)
APOH
ENSG00000091583
15
15
0
0
0
Beta-2-glycoprotein I precursor (apolipoprotein H; Apo-H; B2GPI; Beta(2)GPI; activated protein C-binding protein; APC inhibitor; anticardiolipin cofactor)
APOL1
ENSG00000100342
5
5
0
0
0
Apolipoprotein-L1 precursor (apolipoprotein L-I; apolipoprotein L; ApoL-I; Apo-L; ApoL)
AZGP1
ENSG00000160862
9
9
0
0
0
Zinc-alpha-2-glycoprotein precursor (Zn-alpha-2-glycoprotein; Zn-alpha-2-GP)
AZI1
ENSG00000141577
3
0
0
3
0
5-azacytidine induced 1 isoform a
BF
ENSG00000166285
9
7
0
2
0
Complement factor B precursor (EC 3.4.21.47; C3/C5 convertase; properdin factor B; glycine-rich beta glycoprotein; GBG; PBF2)

A breakdown of the distribution of diagnostic peptides among the 128 parent genes they occur in. HUGO gene ID, HUGO gene identifier; Ensembl gene ID, the Ensembl identifier for the gene containing the diagnostic peptides; PT, the total number of diagnostic peptides found within the coding boundaries of this gene; PM, number of perfect-matching peptides to a protein product of this gene; IE, number of intra-exonic peptides associated with this gene; OE, number of exon overlapping peptides associated with this gene; NE, number of non-exonic peptides associated with this gene; Gene description, the name given to the gene according to the Ensembl Genome Browser database. A complete list is available in Additional data file 1.

Fermin et al. Genome Biology 2006 7:R35   doi:10.1186/gb-2006-7-4-r35