Additional File 2.
The top table describes OIGs in E. coli found to have a putative TFBS site using our own PSWMs, their Zop,i score (in comparison to the first gene of the respective operon) and whether they are experimentally known (or computationally predicted); the bottom table describes E. coli OIGs predicted to have an upstream internal promoter using Li et al.  matrices.
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Laing et al. Genome Biology 2006 7:R46 doi:10.1186/gb-2006-7-6-r46