Research
Identification, characterization and comparative genomics of chimpanzee endogenous retroviruses
-
* Corresponding author: John F McDonald john.mcdonald@biology.gatech.edu
School of Biology, Georgia Institute of Technology, Atlanta, Georgia 30332-0230, USA
Genome Biology 2006, 7:R51 doi:10.1186/gb-2006-7-6-r51
Published: 28 June 2006Additional files
Additional data file 1:
A description of the nine CERV families for which human orthologues were not identified previously
Format: DOC Size: 33KB Download file
This file can be viewed with: Microsoft Word Viewer
Additional data file 2:
The distances (corrected 'p' using Jukes-Cantor model) appear next to each of the branches. RT sequences from species other than chimp, listed in Table 1, are included for comparison. The outgroup is class III element HFV (human foamy virus; see Table 1 and Additional data file 4).
Format: EPS Size: 1.2MB Download file
Additional data file 3:
The distances (corrected 'p' using Jukes-Cantor model) appear next to each of the branches. RT sequences from species other than chimp, listed in Table 1, are included for comparison. The outgroup is class I element from CERV 1/PTERV1 family (see Table 2 and Additional data file 2).
Format: EPS Size: 796KB Download file
Additional data file 4:
The distances (corrected 'p' using Jukes-Cantor model) appear next to each of the branches. RT sequences from species other than chimp, listed in Table 1, are included for comparison. The outgroup is class I element BaEV (baboon endogenous retrovirus; see Table 1 and Additional data file 2).
Format: EPS Size: 573KB Download file
Additional data file 5:
Bootstrap values are shown on the tree. The average pairwise distances (corrected 'p' using Jukes-Cantor model) for each subfamily and the estimated ages are shown.
Format: EPS Size: 663KB Download file
Additional data file 6:
Bootstrap values are shown in the tree. The average pairwise distances (corrected 'p' using Jukes-Cantor model) for each subfamily and the estimated ages are shown.
Format: EPS Size: 1.3MB Download file