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Comparative genomics of Drosophila and human core promoters

Peter C FitzGerald, David Sturgill, Andrey Shyakhtenko, Brian Oliver and Charles Vinson*

Genome Biology 2006, 7:R53 doi:10.1186/gb-2006-7-7-r53

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BioMed Central: 7 citations

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Profiling ascidian promoters as the primordial type of vertebrate promoter

Kohji Okamura, Riu Yamashita, Noriko Takimoto, Koki Nishitsuji, Yutaka Suzuki, Takehiro G Kusakabe, Kenta Nakai BMC Genomics 2011, 12(Suppl 3):S7 (30 November 2011)

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Evidence for post-transcriptional regulation of clustered microRNAs in Drosophila

Sergei S Ryazansky, Vladimir A Gvozdev, Eugene Berezikov BMC Genomics 2011, 12:371 (19 July 2011)

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Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome

Elizabeth A Rach, Hsiang-Yu Yuan, William H Majoros, Pavel Tomancak, Uwe Ohler Genome Biology 2009, 10:R73 (9 July 2009)

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A map of transcription start sites across the Drosophila genome, providing insights into initiation patterns and spatiotemporal conditions.

Research article   Open Access

Complex organizational structure of the genome revealed by genome-wide analysis of single and alternative promoters in Drosophila melanogaster

Qianqian Zhu, Marc S Halfon BMC Genomics 2009, 10:9 (7 January 2009)

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Two different classes of co-occurring motif pairs found by a novel visualization method in human promoter regions

Katsuhiko Murakami, Tadashi Imanishi, Takashi Gojobori, Kenta Nakai BMC Genomics 2008, 9:112 (1 March 2008)

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All and only CpG containing sequences are enriched in promoters abundantly bound by RNA polymerase II in multiple tissues

Julian M Rozenberg, Andrey Shlyakhtenko, Kimberly Glass, Vikas Rishi, Maxim V Myakishev, Peter C FitzGerald, Charles Vinson BMC Genomics 2008, 9:67 (5 February 2008)

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CpG dinucleotides occur in the transcription factor binding sites (TFBSs) of all genes with a housekeeping role, promoting RNA polymerase II binding, whereas TFBSs without a CpG are involved in tissue-specific promoter activity.

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Large-scale analysis of transcriptional cis-regulatory modules reveals both common features and distinct subclasses

Long Li, Qianqian Zhu, Xin He, Saurabh Sinha, Marc S Halfon Genome Biology 2007, 8:R101 (5 June 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology | Editor’s summary

Analysis of 280 experimentally-verified cis-regulatory modules from Drosophila reveal features both common to all and unique to distinct subclasses of modules.

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