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Resolution: standard / high Figure 5.
The 15 DNA motifs derived from grouping 298 octamers whose probability of having a
non-random distribution was less than 1 × 10-16. The table is grouped into two panels. (a) presents the 10 directional motifs, while (b) shows the five non-directional motifs. We present: the sequence logo; the consensus
sequence using IUPAC letters to represent degenerate bases - R (G, A), W (A, T), Y
(T, C), K (G, T), M(A, C), S (G, C), N (A, T, G, C); the name assigned in this work;
the common name if it exists; designations from previous work [10]; the number of
8-mers that peaked that were placed in the family; peak location as base-pairs relative
to the TSS; clustering factor (CF+) on the positive strand; clustering factor (CF-) on the negative strand; the bins that were pooled to define the peak; and the unique
genes in the peak.
FitzGerald et al. Genome Biology 2006 7:R53 doi:10.1186/gb-2006-7-7-r53 |