Research
Shuffling of cis-regulatory elements is a pervasive feature of the vertebrate lineage
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* Corresponding authors: Ferenc Muller Ferenc.Mueller@itg.fzk.de - Elia Stupka elia@tigem.it
1 Telethon Institute of Genetics and Medicine, Via P. Castellino, 80131 Napoli, Italy
2 Institute of Toxicology and Genetics, Forschungzenbrum, Karlsruhe, Postfach 3640, D-76021 Karlsruhe, Germany
Genome Biology 2006, 7:R56 doi:10.1186/gb-2006-7-7-r56
Published: 19 July 2006Additional files
Additional data file 1:
A table showing GO analysis of genes associated with CNEs and genes associated with SCEs
Format: XLS Size: 33KB Download file
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Additional data file 2:
A figure showing boxplots comparing the distribution of the distance of collinear versus noncollinear nongenic SCEs from the transcriptional unit
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Additional data file 3:
A table providing further information on all fragments tested
Format: XLS Size: 23KB Download file
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Additional data file 4:
A document providing supplementary information about tested fragments containing SCEs
Format: PDF Size: 471KB Download file
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Additional data file 5:
A figure showing a Venn diagram that illustrates the overlap analysis of four datasets (CNGs, UCEs, CNEs and SCEs)
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Additional data file 6:
A figure showing the number and type of conserved elements identified by CHAOS and BLAST2 in our dataset as a function of the word size used
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Additional data file 7:
A table providing GO analysis results for genes associated with collinear nongenic SCEs located 1,000 bp upstream of the TSS
Format: XLS Size: 18KB Download file
This file can be viewed with: Microsoft Excel Viewer