Genome Biology

official impact factor 6.89

Feature-level exploration of a published Affymetrix GeneChip control dataset

Rafael A Irizarry*, Leslie M Cope and Zhijin Wu

Genome Biology 2006, 7:404 doi:10.1186/gb-2006-7-8-404

Accesses  

  • Last 30 days: 28 accesses
  • Last year: 411 accesses
  • All time: 4227 accesses

Cited by

BioMed Central: 9 citations

Technical Note   Open Access Highly Accessed

Performance evaluation of commercial miRNA expression array platforms

Sachin Sah, Matthew N McCall, Deepa Eveleigh, Michael Wilson, Rafael A Irizarry BMC Research Notes 2010, 3:80 (18 March 2010)

This article is part of a collection on Microarray normalization...

Methodology article   Open Access

A benchmark for statistical microarray data analysis that preserves actual biological and technical variance

BenoƮt De Hertogh, Bertrand De Meulder, Fabrice Berger, Michael Pierre, Eric Bareke, Anthoula Gaigneaux, Eric Depiereux BMC Bioinformatics 2010, 11:17 (11 January 2010)

Research article   Open Access Highly Accessed

A close examination of double filtering with fold change and t test in microarray analysis

Song Zhang, Jing Cao BMC Bioinformatics 2009, 10:402 (8 December 2009)

Double filtering using fold change and t test to find differentially expressed genes loses power due to differing assumptions about variance, whereas combining Bayesian mixture models with SAM approaches the performance of the theoretically best likelihood ratio test statistic.

Methodology article   Open Access

Bayesian optimal discovery procedure for simultaneous significance testing

Jing Cao, Xian-Jin Xie, Song Zhang, Angelique Whitehurst, Michael A White BMC Bioinformatics 2009, 10:5 (6 January 2009)

Methodology article   Open Access

Use of normalization methods for analysis of microarrays containing a high degree of gene effects

Terri T Ni, William J Lemon, Yu Shyr, Tao P Zhong BMC Bioinformatics 2008, 9:505 (28 November 2008)

Methodology article   Open Access

Background correction using dinucleotide affinities improves the performance of GCRMA

Raad Z Gharaibeh, Anthony A Fodor, Cynthia J Gibas BMC Bioinformatics 2008, 9:452 (23 October 2008)

Research   Open Access Highly Accessed

"Hook"-calibration of GeneChip-microarrays: Chip characteristics and expression measures

Hans Binder, Knut Krohn, Stephan Preibisch Algorithms for Molecular Biology 2008, 3:11 (29 August 2008)

Research article   Open Access

A comprehensive re-analysis of the Golden Spike data: Towards a benchmark for differential expression methods

Richard D Pearson BMC Bioinformatics 2008, 9:164 (26 March 2008)

Methodology article   Open Access Highly Accessed

Fisher's combined p-value for detecting differentially expressed genes using Affymetrix expression arrays

Ann Hess, Hari Iyer BMC Genomics 2007, 8:96 (9 April 2007)