|
Summary of sequences used by nematode species |
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| Clade |
Code |
Species |
ESTs |
Total number of clusters |
Clusters or genes used |
Codons |
GC content (%) |
|
|
|
||||||||
| n |
% |
|||||||
|
|
||||||||
| V |
NA |
Necator americanusa |
4,766 |
2,294 |
1,784 |
78 |
192,756 |
46 |
| AC |
Ancylostoma caninumb |
9,079 |
4,203 |
3,207 |
76 |
305,036 |
48 |
|
| AY |
Ancylostoma ceylanicumb |
10,544 |
3,485 |
2,814 |
81 |
387,372 |
49 |
|
| NB |
Nippostrongylus brasiliensisb |
1,234 |
742 |
630 |
85 |
75,934 |
50 |
|
| HC |
Haemonchus contortusb |
17,268 |
4,146 |
4,102 |
99 |
584,513 |
47 |
|
| OO |
Ostertagia ostertagib |
6,670 |
2,355 |
1,961 |
83 |
222,616 |
48 |
|
| TD |
Teladorsagia circumcinctab |
4,313 |
1,655 |
1,616 |
98 |
194,351 |
48 |
|
| CE |
Caenorhabditis elegansc |
- |
- |
22,254 |
100 |
9,784,215 |
43 |
|
| CB |
Caenorhabditis briggsaec |
- |
- |
19,528 |
100 |
8,007,053 |
44 |
|
| PP |
Pristionchus pacificusc |
8,672 |
3,690 |
2,597 |
70 |
297,605 |
51 |
|
| IVa |
SS |
Strongyloides stercoralisa |
11,236 |
3,635 |
2,803 |
77 |
367,308 |
33 |
| SR |
Strongyloides rattib |
9,932 |
3,264 |
2,682 |
82 |
320,874 |
32 |
|
| PT |
Parastrongyloides trichosurib |
7,712 |
3,086 |
2,457 |
80 |
284,785 |
40 |
|
| IVb |
PE |
Pratylenchus penetransd |
1,908 |
408 |
338 |
83 |
45,802 |
46 |
| GP |
Globodera pallidad |
1,317 |
977 |
479 |
49 |
65,699 |
51 |
|
| GR |
Globodera rostochiensisd |
5,905 |
2,851 |
2,192 |
77 |
290,614 |
51 |
|
| HG |
Heterodera glycinesd |
18,524 |
7,198 |
5,564 |
77 |
742,990 |
50 |
|
| MI |
Meloidogyne incognitad |
12,394 |
4,408 |
3,214 |
73 |
366,435 |
37 |
|
| MJ |
Meloidogyne javanicad |
5,282 |
2,609 |
2,086 |
80 |
203,135 |
36 |
|
| MA |
Meloidogyne arenariad |
3,251 |
1,892 |
1,483 |
78 |
176,816 |
36 |
|
| MH |
Meloidogyne haplad |
13,462 |
4,479 |
3,507 |
78 |
407,985 |
36 |
|
| MC |
Meloidogyne chitwoodid |
7,036 |
2,409 |
1,906 |
79 |
205,612 |
35 |
|
| ZP |
Zeldia punctatac |
388 |
208 |
102 |
49 |
16,723 |
43 |
|
| III |
AS |
Ascaris suumb |
38,944 |
8,482 |
5,830 |
69 |
646,740 |
46 |
| AL |
Ascaris lumbricoidesa |
1,822 |
853 |
508 |
60 |
42,919 |
47 |
|
| TC |
Toxocara canisb |
4,206 |
1,447 |
866 |
60 |
103,065 |
48 |
|
| BM |
Brugia malayia |
25,067 |
9,511 |
6,483 |
68 |
561,296 |
39 |
|
| DI |
Dirofiliaria immitisb |
3,585 |
1,747 |
1,380 |
79 |
126,880 |
38 |
|
| OV |
Onchocerca volvulusa |
14,922 |
5,097 |
2,914 |
57 |
299,336 |
40 |
|
| I |
TS |
Trichinella spiralisa |
10,384 |
3,680 |
2,693 |
73 |
290,794 |
41 |
| TM |
Trichuris murisb |
2,713 |
1,577 |
1,179 |
75 |
147,995 |
49 |
|
| TV |
Trichuris vulpisb |
2,958 |
1,257 |
1,000 |
80 |
106,071 |
48 |
|
|
aHuman parasite, banimal parasite, cfree-living, and dplant parasite. EST, expressed sequence tag. | ||||||||
Mitreva et al. Genome Biology 2006 7:R75 doi:10.1186/gb-2006-7-8-r75 |
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