Table 2 |
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|
Amino acid composition (%) of translations by nematode species |
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| Clade |
Species |
Amino acid |
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|
|
|||||||||||||||||||||
| A |
C |
D |
E |
F |
G |
H |
I |
K |
L |
M |
N |
P |
Q |
R |
S |
T |
V |
W |
Y |
||
| Ala |
Cys |
Asp |
Glu |
Phe |
Gly |
His |
Ile |
Lys |
Leu |
Met |
Asn |
Pro |
Gln |
Arg |
Ser |
Thr |
Val |
Typ |
Tyr |
||
|
|
|||||||||||||||||||||
| V |
NA |
6.9 |
2.4 |
5.2 |
6.2 |
4.7 |
6.3 |
2.5 |
5.5 |
6.5 |
8.6 |
2.6 |
4.2 |
5.0 |
3.7 |
6.2 |
7.2 |
5.3 |
6.5 |
1.2 |
3.3 |
| AC |
7.0 |
2.4 |
5.0 |
6.0 |
4.7 |
5.9 |
2.7 |
5.6 |
6.3 |
8.9 |
2.8 |
4.2 |
4.6 |
3.7 |
6.2 |
7.4 |
5.4 |
6.6 |
1.3 |
3.3 |
|
| AY |
7.6 |
2.2 |
5.5 |
6.6 |
4.2 |
6.5 |
2.5 |
5.2 |
6.4 |
8.5 |
2.5 |
4.0 |
5.1 |
3.8 |
6.1 |
7.1 |
5.3 |
6.7 |
1.2 |
3.0 |
|
| NB |
7.8 |
2.2 |
5.4 |
6.3 |
4.0 |
6.9 |
2.4 |
5.0 |
7.2 |
8.1 |
2.6 |
4.0 |
4.9 |
3.5 |
6.4 |
7.0 |
5.2 |
6.9 |
1.1 |
3.1 |
|
| HC |
7.4 |
2.3 |
5.5 |
6.5 |
4.3 |
6.6 |
2.5 |
5.4 |
7.0 |
8.4 |
2.5 |
4.1 |
4.9 |
3.7 |
6.0 |
6.4 |
5.2 |
6.8 |
1.2 |
3.4 |
|
| OO |
7.2 |
2.3 |
5.3 |
6.3 |
4.4 |
6.7 |
2.6 |
5.3 |
6.7 |
8.4 |
2.6 |
4.0 |
5.2 |
3.8 |
6.1 |
6.8 |
5.3 |
6.7 |
1.1 |
3.1 |
|
| TD |
7.5 |
2.7 |
5.2 |
6.1 |
4.3 |
6.7 |
2.6 |
5.0 |
6.6 |
8.4 |
2.7 |
4.2 |
5.1 |
3.8 |
5.8 |
7.1 |
5.3 |
6.5 |
1.2 |
3.3 |
|
| CE |
6.3 |
2.0 |
5.3 |
6.5 |
4.8 |
5.4 |
2.3 |
6.1 |
6.4 |
8.6 |
2.6 |
4.9 |
4.9 |
4.2 |
5.2 |
8.1 |
5.9 |
6.2 |
1.1 |
3.1 |
|
| CB |
6.3 |
2.0 |
5.3 |
6.8 |
4.7 |
5.4 |
2.3 |
6.0 |
6.4 |
8.5 |
2.6 |
4.8 |
5.0 |
4.2 |
5.4 |
8.0 |
5.8 |
6.1 |
1.1 |
3.1 |
|
| PP |
7.4 |
1.9 |
5.4 |
6.9 |
4.0 |
6.6 |
2.5 |
5.3 |
6.6 |
8.4 |
2.6 |
3.9 |
5.1 |
3.4 |
6.4 |
7.6 |
5.4 |
6.4 |
1.2 |
3.0 |
|
| IVa |
SS |
5.5 |
1.9 |
5.7 |
7.0 |
4.3 |
6.0 |
2.1 |
7.1 |
8.0 |
8.3 |
2.3 |
6.0 |
4.5 |
3.7 |
4.6 |
7.2 |
5.5 |
5.8 |
1.0 |
3.5 |
| SR |
5.4 |
2.0 |
5.4 |
6.5 |
4.7 |
5.9 |
2.1 |
7.4 |
8.1 |
8.6 |
2.4 |
6.2 |
4.3 |
3.6 |
4.3 |
7.2 |
5.4 |
5.8 |
1.0 |
3.8 |
|
| PT |
6.3 |
2.0 |
5.3 |
6.3 |
4.6 |
6.3 |
2.4 |
6.6 |
8.1 |
8.3 |
2.4 |
5.3 |
4.3 |
3.5 |
4.9 |
6.9 |
5.5 |
6.1 |
1.0 |
3.7 |
|
| IVb |
PE |
6.9 |
2.0 |
5.3 |
6.7 |
4.3 |
7.0 |
2.4 |
5.8 |
7.6 |
8.4 |
2.6 |
4.5 |
4.5 |
4.5 |
6.2 |
6.4 |
4.9 |
5.9 |
1.2 |
2.9 |
| GP |
6.8 |
2.4 |
4.5 |
5.4 |
5.6 |
7.2 |
2.4 |
4.9 |
7.1 |
9.1 |
2.3 |
3.9 |
5.8 |
3.8 |
6.7 |
7.1 |
4.8 |
6.0 |
1.2 |
2.9 |
|
| GR |
7.4 |
2.1 |
4.9 |
6.0 |
4.8 |
6.5 |
2.6 |
5.2 |
5.9 |
9.3 |
2.5 |
4.3 |
5.0 |
4.4 |
6.5 |
7.2 |
5.2 |
6.3 |
1.2 |
2.7 |
|
| HG |
7.3 |
2.2 |
4.9 |
6.2 |
5.1 |
6.3 |
2.6 |
5.2 |
6.0 |
9.2 |
2.4 |
4.5 |
5.0 |
4.5 |
6.3 |
7.3 |
5.1 |
6.2 |
1.2 |
2.5 |
|
| MI |
5.7 |
2.0 |
4.8 |
6.7 |
5.1 |
5.6 |
2.2 |
6.5 |
7.3 |
9.4 |
2.3 |
5.6 |
4.5 |
4.6 |
5.3 |
7.5 |
5.2 |
5.4 |
1.1 |
3.0 |
|
| MJ |
5.5 |
2.1 |
4.8 |
6.6 |
5.5 |
5.4 |
2.2 |
6.9 |
7.8 |
9.6 |
2.4 |
5.6 |
4.2 |
4.2 |
5.4 |
7.0 |
5.1 |
5.4 |
1.1 |
3.3 |
|
| MA |
5.7 |
2.0 |
5.0 |
6.9 |
5.3 |
5.7 |
2.2 |
6.9 |
7.3 |
9.7 |
2.3 |
5.5 |
4.1 |
4.3 |
5.2 |
7.0 |
5.0 |
5.6 |
1.1 |
3.2 |
|
| MH |
5.6 |
2.0 |
4.9 |
6.8 |
5.3 |
5.6 |
2.2 |
7.0 |
7.3 |
9.5 |
2.3 |
5.8 |
4.3 |
4.3 |
5.2 |
7.3 |
4.9 |
5.4 |
1.2 |
3.2 |
|
| MC |
5.3 |
2.3 |
4.8 |
6.4 |
5.5 |
5.5 |
2.3 |
7.4 |
7.4 |
9.7 |
2.3 |
6.0 |
4.0 |
4.3 |
4.9 |
7.4 |
5.0 |
5.2 |
1.1 |
3.3 |
|
| ZP |
7.6 |
1.5 |
5.2 |
6.2 |
4.2 |
7.1 |
2.5 |
6.1 |
7.9 |
8.4 |
1.8 |
4.7 |
4.6 |
3.8 |
6.0 |
5.4 |
5.5 |
6.6 |
1.1 |
3.7 |
|
| III |
AS |
7.0 |
2.5 |
4.9 |
6.1 |
4.6 |
5.8 |
2.5 |
6.0 |
6.3 |
8.7 |
2.6 |
4.5 |
4.8 |
3.6 |
6.3 |
7.5 |
5.3 |
6.6 |
1.2 |
3.3 |
| AL |
7.3 |
2.6 |
4.6 |
5.8 |
4.9 |
6.1 |
2.5 |
6.0 |
6.4 |
8.3 |
2.5 |
4.3 |
5.3 |
3.5 |
6.2 |
7.4 |
5.2 |
6.5 |
1.2 |
3.4 |
|
| TC |
7.3 |
2.8 |
5.0 |
6.0 |
4.2 |
6.8 |
2.6 |
5.3 |
7.3 |
8.0 |
2.4 |
4.1 |
5.4 |
3.5 |
6.2 |
6.7 |
5.6 |
6.4 |
1.2 |
3.2 |
|
| BM |
5.6 |
2.5 |
4.6 |
5.6 |
5.4 |
5.0 |
2.6 |
7.1 |
6.8 |
9.6 |
2.8 |
5.0 |
4.1 |
3.8 |
5.6 |
7.8 |
5.3 |
5.9 |
1.1 |
3.6 |
|
| DI |
5.6 |
2.4 |
4.9 |
6.0 |
5.2 |
4.7 |
2.7 |
7.5 |
7.0 |
9.5 |
2.7 |
5.2 |
3.9 |
3.8 |
5.9 |
7.5 |
5.1 |
5.8 |
1.1 |
3.8 |
|
| OV |
6.0 |
2.2 |
5.0 |
6.1 |
4.9 |
5.6 |
2.5 |
6.9 |
7.1 |
8.9 |
2.7 |
4.9 |
4.5 |
3.9 |
5.9 |
7.3 |
5.2 |
5.7 |
1.2 |
3.5 |
|
| I |
TS |
6.2 |
2.6 |
5.0 |
6.2 |
5.1 |
5.1 |
2.5 |
6.1 |
6.6 |
9.5 |
2.6 |
4.9 |
4.1 |
3.9 |
5.6 |
7.6 |
5.1 |
6.5 |
1.2 |
3.4 |
| TM |
7.1 |
3.0 |
5.0 |
6.0 |
4.5 |
6.5 |
2.5 |
5.0 |
6.3 |
8.9 |
2.6 |
4.0 |
5.0 |
3.8 |
6.2 |
7.4 |
5.2 |
6.7 |
1.2 |
3.2 |
|
| TV |
7.0 |
3.0 |
4.9 |
6.1 |
4.5 |
5.8 |
2.5 |
5.1 |
6.4 |
9.0 |
2.6 |
4.2 |
4.8 |
3.8 |
6.1 |
7.5 |
5.5 |
6.8 |
1.3 |
3.2 |
|
|
|
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|
Definitions of species two letter codes are provided in Table 1. |
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|
Mitreva et al. Genome Biology 2006 7:R75 doi:10.1186/gb-2006-7-8-r75 |
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