Table 4

Codon usage of translations by nematode species



Species (codons [n])
AA
Codon
 NA (192,756)
 AC (305,036)
 AY (387,372)
 NB (75,934)
 HC (584,513)
 OO (222,616)
 TD (194,351)
 CE (9,784,215)
 CB (8,007,053)
 PP (297,605)
 SS (367,308)
 SR (320,875)
 PT (284,785)
 PE (45,802)
 GP (65,699)
 GR (290,614)



A
 Ala
 GCA
 28.8
 25.0
 23.9
 19.7
 26.0
 24.9
 25.4
 31.5
 26.1
 20.7
 33.2
 31.4
 24.2
 31.4
 20.4
 22.1
A
 Ala
 GCC
 18.5
 23.0
 24.2
 30.0
 22.8
 23.4
 24.0
 19.9
 22.7
 32.4
 9.1
 9.7
 23.4
 29.5
 31.9
 32.6
A
 Ala
 GCG
 16.0
 17.7
 17.3
 17.6
 13.6
 16.3
 16.6
 13.1
 15.2
 16.7
 2.0
 1.6
 7.1
 13.2
 26.7
 27.3
A
 Ala
 GCT
 36.7
 34.2
 34.6
 32.7
 37.6
 35.4
 34.0
 35.5
 35.9
 30.2
 55.7
 57.4
 45.3
 25.9
 20.9
 18.1
Codons per AA
 13,237
 21,208
 29,600
 5,916
 43,104
 16,126
 14,513
 618,499
 502,187
 22,118
 20,285
 17,201
 17,930
 3,173
 4,494
 21,522
C
 Cys
 TGT
 54.0
 46.9
 44.4
 39.5
 46.7
 49.0
 44.3
 55.3
 56.9
 39.2
 84.4
 85.3
 63.9
 42.6
 42.1
 43.7
C
 Cys
 TGC
 46.0
 53.1
 55.6
 60.5
 53.3
 51.0
 55.7
 44.7
 43.1
 60.8
 15.6
 14.7
 36.1
 57.4
 57.9
 56.3
Codons per AA
 4,538
 7,295
 8,510
 1,702
 13,213
 5,109
 5,154
 196,660
 159,737
 5,789
 6,996
 6,285
 5,682
 925
 1,584
 6,219
D
 Asp
 GAC
 40.5
 46.8
 47.4
 48.5
 40.8
 45.1
 45.4
 32.4
 35.6
 43.0
 13.5
 12.7
 29.1
 39.1
 61.8
 63.8
D
 Asp
 GAT
 59.5
 53.2
 52.6
 51.5
 59.2
 54.9
 54.6
 67.6
 64.4
 57.0
 86.5
 87.3
 70.9
 60.9
 38.2
 36.2
Codons per AA
 9,934
 15,229
 21,124
 4,117
 32,318
 11,797
 10,014
 520,465
 423,125
 16,048
 20,825
 17476
 15,182
 2,448
 2,930
 14,122
E
 Glu
 GAA
 58.8
 52.0
 49.5
 46.3
 57.9
 56.8
 55.3
 62.5
 59.1
 37.7
 80.4
 84.6
 65.3
 60.4
 50.2
 49.7
E
 Glu
 GAG
 41.2
 48.0
 50.5
 53.7
 42.1
 43.2
 44.7
 37.5
 40.9
 62.3
 19.6
 15.4
 34.7
 39.6
 49.8
 50.3
Codons per AA
 11,865
 18,355
 25,474
 4,774
 38,175
 14,008
 11,873
 638,649
 543,774
 20,537
 25,838
 20,812
 18,057
 3,075
 3,570
 17,574
F
 Phe
 TTC
 56.4
 61.0
 67.7
 72.3
 63.7
 63.5
 63.9
 50.5
 58.6
 81.9
 17.8
 17.7
 41.5
 52.8
 43.3
 50.0
F
 Phe
 TTT
 43.6
 39.0
 32.3
 27.7
 36.3
 36.5
 36.1
 49.5
 41.4
 18.1
 82.2
 82.3
 58.5
 47.2
 56.7
 50.0
Codons per AA
 8,977
 14,376
 16,102
 3,031
 24,881
 9,726
 8,311
 464,354
 373,697
 12,020
 15,752
 15,138
 13,032
 1,966
 3,650
 14,036
G
 Gly
 GGA
 42.7
 39.5
 39.7
 41.4
 40.4
 40.0
 40.9
 58.7
 60.7
 55.6
 50.1
 51.2
 52.3
 35.1
 26.9
 24.8
G
 Gly
 GGC
 17.8
 23.3
 23.5
 24.1
 20.9
 22.5
 22.5
 12.5
 12.1
 20.6
 4.3
 3.1
 10.5
 29.7
 34.9
 41.8
G
 Gly
 GGG
 10.1
 10.0
 9.5
 5.9
 9.7
 8.8
 8.4
 8.3
 8.4
 6.9
 5.9
 3.9
 6.8
 11.7
 20.6
 17.5
G
 Gly
 GGT
 29.4
 27.2
 27.3
 28.6
 29.0
 28.8
 28.2
 20.5
 18.8
 16.9
 39.8
 41.8
 30.4
 23.5
 17.6
 15.9
Codons per AA
 12,228
 18,073
 25,292
 5,264
 38,407
 14,914
 13,068
 524,163
 433,832
 19,759
 22,207
 18,910
 18,057
 3,189
 4,741
 18,802
H
 His
 CAC
 43.1
 48.8
 51.9
 55.5
 43.5
 46.8
 45.9
 39.5
 39.7
 53.5
 15.7
 16.2
 35.7
 37.2
 50.5
 52.6
H
 His
 CAT
 56.9
 51.2
 48.1
 44.5
 56.5
 53.2
 54.1
 60.5
 60.3
 46.5
 84.3
 83.8
 64.3
 62.8
 49.5
 47.4
Codons per AA
 4,853
 8,224
 9,726
 1,835
 14,460
 5,779
 4,965
 226,949
 183,283
 7,363
 7,664
 6,679
 6,789
 1,086
 1,589
 7,500
I
 Ile
 ATA
 21.9
 20.1
 16.9
 14.4
 19.6
 19.5
 18.5
 15.6
 13.4
 10.5
 30.2
 30.3
 24.3
 16.0
 15.0
 11.5
I
 Ile
 ATC
 35.1
 41.2
 46.0
 49.6
 39.9
 41.4
 42.2
 31.2
 39.2
 57.4
 9.1
 9.2
 27.0
 33.1
 36.9
 37.1
I
 Ile
 ATT
 43.0
 38.7
 37.2
 36.0
 40.5
 39.2
 39.3
 53.3
 47.4
 32.2
 60.7
 60.6
 48.7
 50.9
 48.1
 51.4
Codons per AA
 10,621
 17,171
 20,026
 3,808
 31,585
 11,807
 9,787
 596,151
 477,819
 15,856
 26,077
 23,850
 18,935
 2,659
 3,216
 15,144
K
 Lys
 AAA
 50.2
 44.1
 39.5
 36.1
 47.5
 48.5
 45.0
 59.3
 57.9
 24.2
 80.4
 82.4
 56.7
 55.5
 58.9
 53.3
K
 Lys
 AAG
 49.8
 55.9
 60.5
 63.9
 52.5
 51.5
 55.0
 40.7
 42.1
 75.8
 19.6
 17.6
 43.3
 44.5
 41.1
 46.7
Codons per AA
 12,606
 19,080
 24,922
 5,451
 41,187
 14,926
 12,874
 622,428
 511,710
 19,693
 29,246
 25,932
 23,023
 3,465
 4,650
 17,224
L
 Leu
 CTA
 11.8
 10.7
 9.7
 9.0
 10.2
 10.9
 9.8
 9.2
 9.9
 7.3
 6.2
 5.5
 5.5
 7.4
 4.4
 3.6
L
 Leu
 CTC
 17.2
 19.5
 21.1
 22.8
 18.6
 20.0
 20.7
 17.3
 18.8
 36.9
 3.4
 3.5
 15.2
 15.0
 18.4
 16.0
L
 Leu
 CTG
 16.1
 21.6
 23.5
 24.6
 18.8
 19.5
 20.5
 14.1
 16.0
 20.1
 1.7
 1.5
 9.3
 17.4
 21.8
 25.2
L
 Leu
 CTT
 23.1
 19.6
 20.2
 18.9
 22.7
 21.2
 21.8
 24.6
 21.1
 18.4
 30.9
 30.5
 24.8
 20.6
 19.3
 17.4
L
 Leu
 TTA
 12.5
 9.6
 7.2
 6.2
 9.9
 8.8
 7.7
 11.4
 9.0
 4.8
 45.8
 46.6
 29.4
 11.3
 8.6
 6.1
L
 Leu
 TTG
 19.3
 19.0
 18.3
 18.4
 19.9
 19.7
 19.5
 23.3
 25.2
 12.5
 12.0
 12.3
 15.8
 28.3
 27.5
 31.7
Codons per AA
 16,664
 27,074
 32,761
 6,176
 49,075
 18,693
 16,399
 841,631
 680,113
 25,061
 30,422
 27,556
 23,764
 3,828
 6,003
 27,096
M
 Met
 ATG
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
Codons per AA
 5,102
 8,525
 9,696
 1,943
 14,531
 5,794
 5,165
 255,677
 209,897
 7,598
 8,490
 7,569
 6,725
 1,189
 1,489
 7,131
N
 Asn
 AAC
 48.0
 52.3
 53.9
 58.0
 46.9
 48.9
 50.7
 37.8
 42.2
 49.7
 13.3
 13.7
 31.5
 35.9
 53.0
 53.7
N
 Asn
 AAT
 52.0
 47.7
 46.1
 42.0
 53.1
 51.1
 49.3
 62.2
 57.8
 50.3
 86.7
 86.3
 68.5
 64.1
 47.0
 46.3
Codons per AA
 8,173
 12,784
 15,647
 3,003
 24,165
 9,013
 8,111
 477,965
 383,675
 11,638
 21,928
 19,815
 15,025
 2,073
 2,589
 12,490
P
 Pro
 CCA
 35.0
 35.0
 33.6
 31.2
 34.6
 35.7
 35.1
 52.8
 53.1
 15.3
 66.2
 66.5
 48.2
 44.0
 20.0
 22.5
P
 Pro
 CCC
 14.0
 15.9
 16.5
 16.7
 15.8
 15.0
 14.5
 9.1
 10.3
 38.3
 3.7
 3.2
 17.3
 16.2
 28.1
 23.4
P
 Pro
 CCG
 20.0
 21.8
 23.1
 28.4
 19.5
 20.9
 22.0
 19.8
 19.1
 17.7
 2.4
 2.1
 8.5
 19.9
 33.0
 39.1
P
 Pro
 CCT
 31.0
 27.3
 26.8
 23.7
 30.0
 28.5
 28.4
 18.2
 17.5
 28.6
 27.7
 28.2
 26.0
 19.9
 18.9
 15.1
Codons per AA
 9,552
 14,020
 19,732
 3,711
 28,449
 11,512
 9,972
 481,470
 403,504
 15,120
 16,634
 13,870
 12,379
 2,068
 3,838
 14,519
Q
 Gln
 CAA
 56.3
 48.9
 45.4
 42.6
 52.6
 52.7
 52.3
 65.6
 63.3
 37.3
 89.1
 88.4
 69.6
 62.9
 52.8
 52.7
Q
 Gln
 CAG
 43.7
 51.1
 54.6
 57.4
 47.4
 47.3
 47.7
 34.4
 36.7
 62.7
 10.9
 11.6
 30.4
 37.1
 47.2
 47.3
Codons per AA
 7,217
 11,341
 14,843
 2,691
 21,339
 8,424
 7,339
 405,452
 332,326
 10,116
 13,651
 11,696
 10,098
 2,058
 2,515
 12,900
R
 Arg
 AGA
 20.8
 18.7
 17.1
 19.3
 18.6
 18.4
 19.8
 29.4
 31.8
 30.6
 50.6
 52.2
 39.1
 13.9
 12.8
 10.7
R
 Arg
 CGA
 23.0
 21.9
 21.5
 20.7
 21.3
 23.2
 21.4
 22.9
 22.0
 16.4
 6.8
 6.3
 8.3
 20.4
 14.3
 17.9
R
 Arg
 AGG
 11.7
 13.3
 13.8
 10.5
 12.5
 12.0
 12.4
 7.4
 8.1
 9.8
 9.8
 6.9
 9.3
 10.2
 10.3
 8.9
R
 Arg
 CGC
 13.9
 16.3
 17.3
 18.2
 14.0
 15.0
 14.7
 9.9
 10.0
 16.2
 3.3
 3.5
 12.3
 19.9
 26.3
 25.1
R
 Arg
 CGG
 8.0
 9.1
 8.9
 7.9
 8.5
 9.0
 8.4
 8.9
 8.3
 5.9
 1.7
 1.3
 3.5
 10.9
 17.2
 17.3
R
 Arg
 CGT
 22.6
 20.7
 21.3
 23.5
 25.0
 22.4
 23.2
 21.6
 19.8
 21.1
 27.8
 29.8
 27.5
 24.7
 19.1
 20.2
Codons per AA
 11,856
 19,042
 23,683
 4,857
 35,121
 13,588
 11,363
 511,021
 432,791
 19,008
 17,062
 13,744
 14,051
 2,840
 4,378
 18,826
S
 Ser
 AGC
 14.0
 16.4
 16.6
 18.0
 14.6
 14.7
 16.2
 10.3
 9.8
 9.8
 3.1
 2.6
 7.7
 15.5
 17.8
 17.5
S
 Ser
 TCA
 21.3
 19.6
 18.1
 16.4
 21.1
 21.4
 19.7
 25.5
 20.4
 14.8
 36.6
 37.6
 27.8
 24.1
 13.5
 13.8
S
 Ser
 TCC
 13.6
 15.6
 16.2
 16.3
 14.0
 14.6
 14.7
 13.2
 16.0
 20.7
 5.2
 4.1
 13.2
 16.9
 20.7
 21.0
S
 Ser
 AGT
 14.8
 13.4
 12.6
 11.8
 14.3
 13.4
 14.0
 15.0
 14.4
 10.4
 23.8
 21.7
 17.5
 12.9
 11.6
 11.9
S
 Ser
 TCG
 16.6
 16.8
 18.6
 22.2
 16.9
 18.2
 17.6
 15.1
 16.7
 21.4
 2.2
 2.0
 8.0
 14.3
 20.3
 22.7
S
 Ser
 TCT
 19.7
 18.1
 18.0
 15.5
 19.1
 17.7
 17.8
 20.8
 22.7
 22.9
 29.2
 31.9
 25.8
 16.1
 16.1
 13.1
Codons per AA
 13,892
 22,627
 27,519
 5,278
 37,542
 15,230
 13,768
 787,872
 641,565
 22,591
 26,438
 22,992
 19,598
 2,921
 4,637
 21,063
T
 Thr
 ACA
 30.6
 28.0
 24.8
 21.6
 27.1
 28.4
 28.3
 34.2
 29.6
 16.3
 51.5
 50.9
 38.6
 35.0
 21.9
 22.6
T
 Thr
 ACC
 20.4
 22.9
 25.5
 30.8
 22.8
 23.2
 22.4
 17.9
 21.8
 25.7
 7.6
 7.5
 20.8
 22.9
 27.4
 26.8
T
 Thr
 ACG
 18.9
 21.8
 22.6
 22.6
 19.9
 21.5
 22.1
 15.2
 17.2
 24.9
 3.9
 3.2
 9.2
 16.3
 27.9
 28.8
T
 Thr
 ACT
 30.1
 27.3
 27.2
 25.0
 30.2
 26.9
 27.2
 32.7
 31.4
 33.2
 36.9
 38.3
 31.4
 25.7
 22.7
 21.7
Codons per AA
 10,197
 16,333
 20,529
 3,959
 30,547
 11,909
 10,364
 571,606
 461,093
 15,952
 20,070
 17,360
 15,532
 2,255
 3,164
 14,970
V
 Val
 GTA
 18.7
 16.9
 14.6
 12.9
 18.1
 16.2
 15.8
 15.9
 13.7
 11.9
 26.5
 26.5
 19.0
 12.8
 8.3
 7.3
V
 Val
 GTC
 21.2
 24.7
 25.1
 28.6
 24.9
 24.3
 25.4
 21.8
 26.3
 34.1
 10.0
 8.5
 20.3
 24.5
 26.3
 28.2
V
 Val
 GTG
 26.8
 29.3
 30.8
 31.8
 26.3
 29.5
 29.1
 23.4
 25.5
 30.6
 5.1
 3.8
 15.8
 28.0
 37.3
 39.2
V
 Val
 GTT
 33.2
 29.1
 29.5
 26.7
 30.8
 30.0
 29.7
 38.9
 34.6
 23.5
 58.4
 61.2
 44.9
 34.7
 28.1
 25.3
Codons per AA
 12,606
 20,139
 25,863
 5,243
 39,506
 14,814
 12,547
 605,528
 491,117
 18,939
 21,158
 18,523
 17,487
 2,707
 3,946
 18,216
W
 Typ
 TGG
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
Codons per AA
 2,289
 3,952
 4,517
 833
 7,229
 2,494
 2,424
 107,642
 90,785
 3,498
 3,508
 3,090
 2,830
 531
 791
 3,496
Y
 Tyr
 TAC
 51.6
 56.5
 59.8
 62.8
 52.7
 54.6
 55.7
 44.0
 47.1
 64.9
 18.5
 18.0
 36.6
 39.4
 57.1
 61.6
Y
 Tyr
 TAT
 48.4
 43.5
 40.2
 37.2
 47.3
 45.4
 44.3
 56.0
 52.9
 35.1
 81.5
 82.0
 63.4
 60.6
 42.9
 38.4
Codons per AA
 6,322
 10,100
 11,774
 2,335
 19,614
 6,915
 6,328
 307,728
 250,436
 8,842
 12,998
 12,250
 10,470
 1,346
 1,894
 7,748



Species (codons [n])
AA
Codon
 HG (742,990)
 Mi (366,435)
 Mj (203,135)
 Ma (176,816)
 Mh (407,985)
 Mc (205,612)
 ZP (16,723)
 AS (646,740)
 AL (42,919)
 TC (103,065)
 BM (561,296)
 DI (126,880)
 OV (299,336)
 TS (290,794)
 TM (147,995)
 TV (106,071)



A
 Ala
 GCA
 22.3
 32.2
 32.3
 32.8
 34.9
 36.9
 19.5
 32.7
 31.7
 29.3
 39.1
 40.0
 37.5
 31.7
 24.1
 26.7
A
 Ala
 GCC
 33.0
 13.3
 12.8
 11.6
 11.4
 11.2
 24.9
 18.1
 20.9
 20.6
 12.3
 11.7
 13.8
 16.4
 27.7
 25.9
A
 Ala
 GCG
 25.9
 8.1
 8.0
 7.0
 7.3
 6.8
 7.4
 22.8
 23.9
 23.7
 12.3
 12.8
 14.3
 18.4
 22.7
 22.1
A
 Ala
 GCT
 18.7
 46.3
 46.9
 48.6
 46.4
 45.2
 48.2
 26.4
 23.5
 26.4
 36.3
 35.5
 34.4
 33.5
 25.5
 25.3
Codons per AA
 54,049
 21,050
 11,150
 10,069
 22,749
 10,844
 1,264
 45,388
 3,142
 7,531
 31,439
 7,087
 17,813
 18,017
 10,515
 7,439.0
C
 Cys
 TGT
 44.5
 71.4
 72.8
 73.7
 74.3
 72.9
 56.3
 48.8
 48.8
 42.8
 61.2
 62.9
 60.0
 51.8
 31.8
 33.8
C
 Cys
 TGC
 55.5
 28.6
 27.2
 26.3
 25.7
 27.1
 43.8
 51.2
 51.3
 57.2
 38.8
 37.1
 40.0
 48.2
 68.2
 66.2
Codons per AA
 16,227
 7,328
 4,217
 3,502
 8,174
 4,656
 256
 16,446
 1,120
 2,901
 14,026
 2,998
 6,689
 7,559
 4,428
 3,174.0
D
 Asp
 GAC
 65.5
 26.5
 27.1
 24.8
 24.2
 22.2
 32.1
 35.2
 41.0
 40.5
 24.0
 20.5
 20.6
 33.2
 56.3
 56.1
D
 Asp
 GAT
 34.5
 73.5
 72.9
 75.2
 75.8
 77.8
 67.9
 64.8
 59.0
 59.5
 76.0
 79.5
 79.4
 66.8
 43.7
 43.9
Codons per AA
 36,495
 17,627
 9,747
 8,876
 19,863
 9,894
 873
 31,446
 1,970
 5,114
 26,014
 6,223
 15,056
 14,599
 7,378
 5,214.0
E
 Glu
 GAA
 55.7
 75.3
 74.6
 76.2
 76.6
 78.4
 77.9
 56.5
 55.4
 52.8
 73.9
 77.0
 77.1
 79.0
 61.4
 61.8
E
 Glu
 GAG
 44.3
 24.7
 25.4
 23.8
 23.4
 21.6
 22.1
 43.5
 44.6
 47.2
 26.1
 23.0
 22.9
 21.0
 38.6
 38.2
Codons per AA
 45,714
 24,640
 13,289
 12,192
 27,589
 13,117
 1,041
 39,335
 2,469
 6,214
 31,136
 7,577
 18,333
 18,001
 8,907
 6,459.0
F
 Phe
 TTC
 48.9
 24.3
 21.8
 20.9
 21.3
 18.1
 55.3
 54.5
 56.6
 60.0
 35.0
 37.3
 36.9
 34.3
 53.0
 52.6
F
 Phe
 TTT
 51.1
 75.7
 78.2
 79.1
 78.7
 81.9
 44.7
 45.5
 43.4
 40.0
 65.0
 62.7
 63.1
 65.7
 47.0
 47.4
Codons per AA
 37,855
 18,687
 11,103
 9,412
 21,612
 11,345
 704
 29,754
 2,102
 4,296
 30,333
 6,568
 14,714
 14,907
 6,593
 4,737.0
G
 Gly
 GGA
 25.5
 44.5
 44.7
 45.8
 45.8
 46.2
 33.3
 31.2
 31.0
 32.5
 32.7
 35.4
 35.0
 31.1
 29.9
 31.7
G
 Gly
 GGC
 41.8
 14.8
 14.9
 13.7
 14.0
 13.0
 19.2
 25.0
 28.1
 26.4
 16.8
 16.9
 17.2
 24.6
 33.8
 33.2
G
 Gly
 GGG
 15.7
 13.7
 13.6
 13.0
 10.0
 8.6
 4.9
 10.6
 11.1
 10.6
 10.2
 7.9
 9.2
 9.1
 9.5
 11.0
G
 Gly
 GGT
 17.0
 27.1
 26.7
 27.5
 30.2
 32.1
 42.6
 33.2
 29.8
 30.5
 40.2
 39.8
 38.6
 35.3
 26.9
 24.0
Codons per AA
 46,667
 20,413
 10,992
 10,064
 22,693
 11,194
 1,186
 37,251
 2,633
 7,031
 27,963
 5,944
 16,849
 14,863
 9,577
 6,196.0
H
 His
 CAC
 51.6
 28.1
 27.8
 24.8
 25.4
 22.3
 33.7
 38.8
 41.3
 43.8
 29.2
 22.2
 25.2
 39.0
 51.0
 49.7
H
 His
 CAT
 48.4
 71.9
 72.2
 75.2
 74.6
 77.7
 66.3
 61.2
 58.7
 56.2
 70.8
 77.8
 74.8
 61.0
 49.0
 50.3
Codons per AA
 19,477
 7,978
 4,459
 3,819
 9,003
 4,628
 421
 16,467
 1,060
 2,710
 14,787
 3,389
 7,427
 7,245
 3,626
 2,601.0
I
 Ile
 ATA
 9.7
 23.0
 23.1
 22.9
 23.5
 25.3
 13.8
 23.2
 21.9
 19.6
 29.5
 29.2
 27.5
 25.0
 26.6
 27.0
I
 Ile
 ATC
 35.7
 12.5
 11.7
 11.2
 11.0
 9.8
 36.5
 36.2
 39.7
 40.7
 22.3
 23.0
 24.7
 21.5
 29.7
 27.9
I
 Ile
 ATT
 54.7
 64.5
 65.1
 65.9
 65.5
 64.8
 49.7
 40.6
 38.3
 39.7
 48.3
 47.8
 47.7
 53.5
 43.6
 45.2
Codons per AA
 38,860
 23,849
 13,986
 12,183
 28,528
 15,200
 1,018
 38,551
 2,582
 5,486
 39,971
 9,443
 20,692
 17,746
 7,330
 5,428.0
K
 Lys
 AAA
 60.2
 72.5
 72.6
 73.2
 74.7
 76.6
 61.2
 53.8
 53.4
 53.4
 69.0
 69.4
 69.5
 69.4
 44.6
 47.3
K
 Lys
 AAG
 39.8
 27.5
 27.4
 26.8
 25.3
 23.4
 38.8
 46.2
 46.6
 46.6
 31.0
 30.6
 30.5
 30.6
 55.4
 52.7
Codons per AA
 44,829
 26,575
 15,780
 12,963
 29,876
 15,288
 1,324
 40,639
 2,742
 7,563
 37,793
 8,913
 21,167
 19,233
 9,334
 6,794.0
L
 Leu
 CTA
 3.1
 6.7
 6.4
 6.3
 6.3
 6.9
 8.1
 10.4
 9.9
 10.5
 10.3
 9.9
 9.5
 5.8
 7.9
 8.7
L
 Leu
 CTC
 17.1
 7.1
 6.6
 6.0
 6.4
 5.7
 15.9
 18.9
 19.3
 19.1
 7.8
 7.2
 7.6
 6.9
 10.9
 11.1
L
 Leu
 CTG
 21.5
 5.0
 4.7
 4.7
 4.8
 4.5
 4.5
 14.8
 16.1
 18.0
 13.0
 10.9
 13.8
 16.0
 24.7
 23.4
L
 Leu
 CTT
 17.9
 24.7
 25.0
 25.2
 25.3
 26.0
 25.1
 21.2
 20.7
 20.5
 19.7
 19.8
 19.6
 17.3
 18.0
 18.6
L
 Leu
 TTA
 6.6
 30.9
 31.4
 32.3
 33.4
 35.3
 17.5
 13.5
 12.8
 10.1
 26.1
 27.8
 24.6
 17.3
 9.2
 9.7
L
 Leu
 TTG
 33.8
 25.6
 25.9
 25.5
 23.8
 21.7
 29.0
 21.3
 21.2
 21.7
 23.1
 24.5
 24.9
 36.8
 29.4
 28.5
Codons per AA
 68,607
 34,549
 19,485
 17,118
 38,589
 20,003
 1,397
 56,369
 3,564
 8,233
 53,591
 12,048
 26,576
 27,491
 13,110
 9,558
M
 Met
 ATG
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
Codons per AA
 18,014
 8,593
 4,930
 4,095
 9,532
 4,730
 306
 16,510
 1,091
 2,477
 15,883
 3,373
 7,990
 7,625
 3,836
 2,785
N
 Asn
 AAC
 48.6
 22.3
 20.9
 19.9
 18.8
 17.6
 46.6
 43.2
 44.1
 49.1
 27.2
 23.8
 25.1
 34.9
 53.1
 53.1
N
 Asn
 AAT
 51.4
 77.7
 79.1
 80.1
 81.2
 82.4
 53.4
 56.8
 55.9
 50.9
 72.8
 76.2
 74.9
 65.1
 46.9
 46.9
Codons per AA
 33,133
 20,562
 11,306
 9,756
 23,509
 12,351
 779
 28,917
 1,836
 4,201
 28,196
 6,554
 14,572
 14,343
 5,930
 4,424
P
 Pro
 CCA
 24.2
 40.6
 39.9
 41.3
 44.8
 45.0
 46.5
 36.9
 32.5
 34.9
 45.0
 45.5
 44.2
 38.3
 30.0
 30.3
P
 Pro
 CCC
 24.5
 10.6
 9.6
 8.8
 7.9
 7.2
 14.2
 14.9
 18.4
 17.1
 10.7
 8.5
 9.7
 10.9
 17.7
 17.1
P
 Pro
 CCG
 34.9
 10.5
 11.2
 10.7
 8.5
 8.5
 11.7
 24.7
 24.5
 24.6
 19.1
 19.2
 22.9
 24.4
 28.4
 28.7
P
 Pro
 CCT
 16.4
 38.3
 39.3
 39.1
 38.9
 39.3
 27.6
 23.5
 24.7
 23.4
 25.2
 26.8
 23.2
 26.3
 23.8
 23.9
Codons per AA
 36,929
 16,614
 8,537
 7,305
 17,440
 8,307
 768
 30,784
 2,276
 5,519
 23,108
 4,915
 13,464
 11,909
 7,466
 5,066
Q
 Gln
 CAA
 57.1
 79.4
 79.6
 80.2
 80.9
 80.3
 82.0
 57.4
 57.1
 50.2
 61.4
 63.6
 62.8
 59.9
 50.4
 50.3
Q
 Gln
 CAG
 42.9
 20.6
 20.4
 19.8
 19.1
 19.7
 18.0
 42.6
 42.9
 49.8
 38.6
 36.4
 37.2
 40.1
 49.6
 49.7
Codons per AA
 33,107
 16,926
 8,552
 7,532
 17,739
 8,805
 640
 23,271
 1,514
 3,612
 21,428
 4,769
 11,797
 11,420
 5,644
 4,047
R
 Arg
 AGA
 11.6
 28.8
 28.1
 29.2
 30.0
 30.0
 16.4
 17.7
 16.3
 17.2
 22.3
 21.9
 21.2
 21.8
 16.3
 17.6
R
 Arg
 CGA
 18.0
 16.8
 16.8
 17.3
 16.7
 17.2
 17.3
 21.3
 18.5
 19.7
 24.0
 26.3
 25.4
 22.7
 18.1
 17.7
R
 Arg
 AGG
 9.0
 9.7
 9.4
 8.8
 8.9
 8.6
 2.9
 12.3
 11.8
 12.4
 10.9
 8.8
 9.5
 7.1
 12.4
 13.2
R
 Arg
 CGC
 25.0
 9.4
 9.2
 8.5
 8.8
 7.9
 15.3
 15.8
 20.2
 17.3
 9.6
 9.4
 10.4
 13.7
 22.9
 21.8
R
 Arg
 CGG
 15.8
 5.6
 5.4
 4.9
 4.5
 4.5
 1.2
 8.3
 7.9
 7.2
 9.2
 8.4
 8.8
 8.5
 11.6
 11.5
R
 Arg
 CGT
 20.6
 29.7
 31.0
 31.4
 31.1
 31.8
 47.0
 24.6
 25.3
 26.2
 24.0
 25.2
 24.8
 26.1
 18.7
 18.2
Codons per AA
 47,178
 19,486
 11,042
 9,171
 21,409
 9,973
 1,001
 40,766
 2,650
 6,429
 31,420
 7,457
 17,634
 16,384
 9,203
 6,468
S
 Ser
 AGC
 15.5
 9.1
 9.4
 8.4
 7.9
 7.6
 11.8
 16.4
 16.6
 17.1
 11.0
 9.7
 11.1
 15.1
 23.2
 22.5
S
 Ser
 TCA
 14.4
 24.5
 24.3
 24.1
 27.0
 28.6
 18.1
 22.3
 20.8
 19.6
 28.4
 29.5
 27.7
 21.0
 14.4
 15.5
S
 Ser
 TCC
 20.8
 9.0
 8.6
 7.9
 6.8
 6.6
 15.7
 9.9
 12.0
 11.0
 10.4
 9.3
 10.7
 10.3
 17.7
 17.3
S
 Ser
 AGT
 12.5
 17.6
 17.2
 18.5
 18.1
 18.4
 13.6
 15.8
 13.8
 14.4
 19.2
 18.7
 19.1
 19.1
 13.3
 13.8
S
 Ser
 TCG
 22.4
 7.8
 8.3
 7.9
 6.2
 6.2
 13.3
 21.4
 22.3
 24.8
 12.2
 12.8
 14.0
 14.4
 19.1
 18.3
S
 Ser
 TCT
 14.3
 31.9
 32.1
 33.3
 34.0
 32.5
 27.5
 14.3
 14.4
 13.1
 18.9
 20.0
 17.5
 20.1
 12.2
 12.6
Codons per AA
 54,466
 27,606
 14,239
 12,353
 29,702
 15,207
 899
 48,736
 3,157
 6,860
 43,504
 9,483
 21,762
 22,175
 10,980
 7,907
T
 Thr
 ACA
 23.2
 40.6
 39.2
 41.1
 42.3
 42.7
 19.5
 30.2
 30.3
 27.5
 39.0
 40.1
 38.1
 31.8
 21.3
 25.1
T
 Thr
 ACC
 25.6
 11.1
 9.9
 9.0
 9.1
 7.9
 28.6
 19.2
 22.4
 20.0
 15.6
 12.9
 15.6
 16.3
 24.9
 23.1
T
 Thr
 ACG
 26.6
 8.4
 8.8
 8.6
 8.5
 7.7
 12.5
 26.8
 24.9
 29.2
 15.4
 16.3
 17.4
 19.8
 30.9
 30.3
T
 Thr
 ACT
 24.6
 39.8
 42.1
 41.4
 40.1
 41.7
 39.4
 23.8
 22.4
 23.2
 30.0
 30.7
 28.9
 32.1
 22.9
 21.5
Codons per AA
 37,607
 19,046
 10,254
 8,837
 20,194
 10,213
 919
 34,207
 2,219
 5,814
 29,901
 6,460
 15,488
 14,901
 7,680
 5,829
V
 Val
 GTA
 6.0
 17.6
 16.9
 17.5
 17.0
 20.7
 14.1
 16.4
 16.6
 16.4
 25.4
 26.2
 26.3
 19.4
 16.6
 17.7
V
 Val
 GTC
 29.6
 13.2
 12.3
 11.9
 11.4
 10.7
 29.2
 20.6
 21.7
 21.3
 14.3
 14.0
 14.4
 16.7
 22.8
 21.9
V
 Val
 GTG
 38.3
 13.5
 13.2
 11.7
 12.9
 11.7
 12.9
 29.7
 31.1
 30.7
 22.9
 21.2
 21.6
 26.3
 27.6
 28.3
V
 Val
 GTT
 26.1
 55.8
 57.6
 58.9
 58.6
 56.9
 43.8
 33.2
 30.6
 31.5
 37.5
 38.7
 37.7
 37.6
 33.0
 32.1
Codons per AA
 45,942
 19,706
 10,925
 9,899
 21,917
 10,703
 1,109
 42,490
 2,780
 6,580
 33,067
 7,389
 17,037
 18,805
 9,977
 7,169
W
 Typ
 TGG
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
 100.0
Codons per AA
 9,033
 4,055
 2,294
 2,002
 4,746
 2,298
 188
 7,902
 532
 1,213
 6,380
 1,377
 3,584
 3,486
 1,777
 1,350
Y
 Tyr
 TAC
 58.9
 23.2
 22.2
 20.9
 21.4
 19.6
 34.6
 37.3
 41.2
 46.0
 30.3
 26.0
 28.4
 38.7
 61.8
 62.7
Y
 Tyr
 TAT
 41.1
 76.8
 77.8
 79.1
 78.6
 80.4
 65.4
 62.7
 58.8
 54.0
 69.7
 74.0
 71.6
 61.3
 38.2
 37.3
Codons per AA
 18,687
 11,019
 6,656
 5,582
 12,940
 6,716
 627
 21,299
 1,453
 3,267
 20,353
 4,785
 10,337
 9,939
 4,691
 3,401

Values are given as % per AA, or as numbers for Codons per AA. Definitions of species two letter codes are provided in Table 1. AA, amino acid.

Mitreva et al. Genome Biology 2006 7:R75   doi:10.1186/gb-2006-7-8-r75

Open Data