Table 5 |
|||||||||||||||
|
Candidate optimal codons in five species, determined as frequency increase by increased expression levela |
|||||||||||||||
|
Species |
Species |
||||||||||||||
|
|
|
||||||||||||||
|
AA |
Codon |
AY |
MI |
OV |
SR |
TS |
AA |
Codon |
AY |
MI |
OV |
SR |
TS |
||
|
|
|||||||||||||||
|
A |
Ala |
GCA |
GCA |
N |
Asn |
AAC |
AAC |
AAC |
AAC |
||||||
|
A |
Ala |
GCC |
GCC |
GCC |
GCC |
GCC |
N |
Asn |
AAT |
AAT |
|||||
|
A |
Ala |
GCT |
GCT |
GCT |
GCT |
GCT |
|||||||||
|
P |
Pro |
CCA |
CCA |
CCA |
CCA |
CCA |
|||||||||
|
C |
Cys |
TGC |
TGC |
TGC |
TGC |
TGC |
P |
Pro |
CCC |
CCC |
|||||
|
P |
Pro |
CCG |
CCG |
||||||||||||
|
D |
Asp |
GAC |
GAC |
GAC |
GAC |
GAC |
P |
Pro |
CCT |
CCT |
|||||
|
D |
Asp |
GAT |
GAT |
||||||||||||
|
Q |
Gln |
CAA |
CAA |
CAA |
|||||||||||
|
E |
Glu |
GAA |
GAA |
GAA |
GAA |
Q |
Gln |
CAG |
CAG |
CAG |
CAG |
||||
|
E |
Glu |
GAG |
GAG |
GAG |
|||||||||||
|
R |
Arg |
AGA |
AGA |
||||||||||||
|
F |
Phe |
TTC |
TTC |
TTC |
TTC |
TTC |
R |
Arg |
CGA |
CGA |
|||||
|
F |
Phe |
TTT |
TTT |
R |
Arg |
AGG |
AGG |
||||||||
|
R |
Arg |
CGC |
CGC |
CGC |
CGC |
||||||||||
|
G |
Gly |
GGA |
GGA |
GGA |
GGA |
GGA |
R |
Arg |
CGG |
CGG |
|||||
|
G |
Gly |
GGC |
GGC |
R |
Arg |
CGT |
CGT |
CGT |
CGT |
||||||
|
G |
Gly |
GGT |
GGT |
||||||||||||
|
S |
Ser |
AGC |
AGC |
AGC |
AGC |
AGC |
AGC |
||||||||
|
H |
His |
CAC |
CAC |
CAC |
CAC |
CAC |
CAC |
S |
Ser |
TCA |
TCA |
TCA |
|||
|
S |
Ser |
TCC |
TCC |
TCC |
TCC |
TCC |
|||||||||
|
I |
Ile |
ATA |
ATA |
S |
Ser |
AGT |
AGT |
||||||||
|
I |
Ile |
ATC |
ATC |
ATC |
ATC |
ATC |
S |
Ser |
TCG |
TCG |
TCG |
TCG |
|||
|
I |
Ile |
ATT |
ATT |
S |
Ser |
TCT |
TCT |
||||||||
|
K |
Lys |
AAA |
AAA |
T |
Thr |
ACC |
ACC |
ACC |
ACC |
ACC |
|||||
|
K |
Lys |
AAG |
AAG |
AAG |
AAG |
AAG |
T |
Thr |
ACG |
ACG |
ACG |
||||
|
T |
Thr |
ACT |
ACT |
ACT |
|||||||||||
|
L |
Leu |
CTA |
CTA |
||||||||||||
|
L |
Leu |
CTC |
CTC |
CTC |
CTC |
V |
Val |
GTA |
GTA |
||||||
|
L |
Leu |
CTG |
CTG |
V |
Val |
GTC |
GTC |
GTC |
GTC |
GTC |
|||||
|
L |
Leu |
CTT |
CTT |
CTT |
CTT |
CTT |
V |
Val |
GTG |
GTG |
|||||
|
L |
Leu |
TTA |
TTA |
V |
Val |
GTT |
GTT |
GTT |
|||||||
|
L |
Leu |
TTG |
TTG |
TTG |
TTG |
||||||||||
|
Y |
Tyr |
TAC |
TAC |
TAC |
TAC |
TAC |
TAC |
||||||||
|
|
|||||||||||||||
|
aExpression level inferred by EST number. Definitions of species two letter codes are provided in Table 1. AA, amino acid; EST, expressed sequence tag. |
|||||||||||||||
|
Mitreva et al. Genome Biology 2006 7:R75 doi:10.1186/gb-2006-7-8-r75 |
|||||||||||||||
