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Validation results on genomic loci containing ERE-like sequences identified by sequencing random ChIP fragment from an ER ChIP library |
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| Nearest gene |
Genomic location |
Pattern |
Validation |
|
|
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| NBPF4 |
chr1:108,492,542-108,492,560 |
ttaGGTCAgctTGTCCcag |
Binding |
| C1orf21 |
chr1:181,327,606-181,327,624 |
ctgGGTCAgcaTGACCttc |
Binding |
| chr11:64,942,548-64,942,566 |
ctgGGGCAtgcTCACCtca |
Binding |
|
| SEC15L2 |
chr2:72,713,948-72,713,966 |
ggaGGTCTaggTGACCtcg |
Binding |
| chr3:132,571,914-132,571,932 |
aggGGTCAtggTGACAtta |
Binding |
|
| SLC6A6 |
chr3:14,429,604-14,429,622 |
ctgGGTCActgTGTCCgga |
Binding |
| SIAH2 |
chr3:151,957,126-151,957,144 |
acaGGTCAccaTGACCtgg |
Binding |
| SNX24 |
chr5:122,216,372-122,216,390 |
cagGGTTAtctTAACCaac |
Binding |
| PKIB |
chr6:122,985,938-122,985,956 |
tttGGTCAtgtGGGCCtga |
Binding |
| chr6:23,720,183-23,720,201 |
tcgGGTCAtgcTGCCTggg |
Binding |
|
| BTBD9 |
chr6:38,337,561-38,337,579 |
tggGGTCAtggTGACTcct |
Binding |
| SHB |
chr9:37,943,504-37,943,522 |
gcaGGTGGggcTGCCTcca |
Binding |
| SLC38A1 |
chr12:44,881,783-44,881,801 |
cagAGTGAactTGACCtga |
Binding |
| SLC38A1 |
chr12:44,881,800-44,881,818 |
gagGGTCAtccCAACCcca |
Binding |
| chr16:2,781,142-2,781,160 |
ccaGGTCGgctTGCCCtta |
Binding |
|
| chr16:743,678-743,696 |
atgGGTCActgTGACCcag |
Binding |
|
| chr17:46,382,536-46,382,554 |
cccGGACAcgaTGTCCccc |
Binding |
|
| TEX14 |
chr17:54,072,183-54,072,201 |
cacGGTCAtggTGACCtga |
Binding |
| chr20:54,945,262-54,945,280 |
gggAGACAcccTGACCtaa |
Binding |
|
| chr2:222,089,422-222,089,440 |
cagGTTCAaaaTGACGggt |
Nonbinding |
|
| STK10 |
chr5:171,535,283-171,535,301 |
tgtGGTCTctgTGCCCagg |
Nonbinding |
| KIAA1191 |
chr5:175,712,328-175,712,346 |
agaGGCCAgtcTACCCtcc |
Nonbinding |
| RASGEF1C |
chr5:179,478,929-179,478,947 |
gtgGGCCGgccTGGCCtgt |
Nonbinding |
| SORCS1 |
chr10:108,692,194-108,692,212 |
cacAGTCAtgcTGACCcca |
Nonbinding |
| chr14:38,648,346-38,648,364 |
attGGTCAgagTGACAgaa |
Nonbinding |
|
| chr14:79,636,926-79,636,944 |
accTGGCAcgcTGACCcat |
Nonbinding |
|
| LOC57149 |
chr16:20,819,825-20,819,843 |
tggGGTCAcacAGGCCcgt |
Nonbinding |
| chr16:25,535,373-25,535,391 |
ttaGTTCAcctTAACCcct |
Nonbinding |
|
| CEACAM6 |
chr19:46,954,305-46,954,323 |
cagGACCAgggAGACCtga |
Nonbinding |
|
Shown in bold and underlined are nucleotides that deviate from the consensus core ERE. ChIP, chromatin immunoprecipitation; ER, estrogen receptor; ERE, estrogen response element. | |||
Vega et al. Genome Biology 2006 7:R82 doi:10.1186/gb-2006-7-9-r82 |
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