Table 3 |
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|
CRE sites present near a set of brain-related miRNAs in the human genome |
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|
Conserved CRE site* |
Conserved CRE half site† |
|||
|
|
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|
miRNA |
Position‡ |
Distance (bp) |
Position‡ |
Distance (bp) |
|
|
||||
|
mir-124a-1 |
chr8:9801040-9801044 |
-2648 |
||
|
mir-124a-2 |
chr8:65452347-65452354 |
-1913 |
||
|
mir-124a-3 |
chr20:61279330-61279337 |
-968 |
chr20:61232305-61232309 |
-47992 |
|
chr20:61276720-61276724 |
-3577 |
|||
|
chr20:61317969-61317973 |
37665 |
|||
|
mir-9-1 |
chr1:153204718-153204725 |
-1423 |
chr1:153212345-153212349 |
-9051 |
|
mir-9-2 |
chr5:88007547-88007554 |
-9034 |
chr5:88016703-88016707 |
-18190 |
|
chr5:87995510-87995514 |
3003 |
|||
|
mir-9-3 |
chr15:87706692-87706699 |
-5565 |
chr15:87712302-87712306 |
50 |
|
chr15:87711861-87711868 |
-391 |
chr15:87740065-87740069 |
27813 |
|
|
chr15:87743860-87743867 |
31604 |
chr15:87757417-87757421 |
45165 |
|
|
chr15:87757437-87757441 |
45185 |
|||
|
mir-132/212 |
chr17:1901302-1901309 |
-1247 |
chr17:1922008-1922012 |
-21956 |
|
chr17:1900538-1900545 |
-486 |
chr17:1921968-1921972 |
-21916 |
|
|
chr17:1900522-1900529 |
-470 |
chr17:1913396-1913400 |
-13344 |
|
|
chr17:1900084-1900091 |
-35 |
|||
|
mir-135a-2 |
chr12:96426695-96426699 |
-33363 |
||
|
mir-153-1 |
chr2:219999719-219999726 |
-15292 |
chr2:219969610-219969614 |
14817 |
|
chr2:219939817-219939824 |
44611 |
chr2:219969479-219969483 |
14948 |
|
|
chr2:219964362-219964366 |
20065 |
|||
|
mir-29a/29b-1 |
chr7:130063683-130063690 |
-44859 |
||
|
mir-29b-2 |
chr1:204385822-204385826 |
-21559 |
||
|
chr1:204384854-204384858 |
-20591 |
|||
|
mir-139 |
chr11:72021296-72021300 |
-17474 |
||
|
|
||||
|
*CRE (cAMP response element); site: TGACGTCA. †CRE half site: TGACG; can bind to CREB with weaker affinity. ‡Position is referenced on hg17. Only sites perfectly conserved in human, mouse, rat and dog are shown. |
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|
Wu and Xie Genome Biology 2006 7:R85 doi:10.1186/gb-2006-7-9-r85 |
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