Table 6

mRNA assessment: summary of accuracy measures of mRNA features at the nucleotide and exon levels

Nucleotide

Exon



NSn

NSp

N CC

ESn

ESp

ME

WE


Category 1

FGENESH++

48.87%

81.16%

0.62

35.84%

58.41%

19.20%

22.84%

PAIRAGON-any

56.31%

89.36%

0.70

41.23%

74.93%

15.83%

7.95%

Category 3

ACEVIEW

88.08%

79.47%

0.83

64.16%

61.18%

3.60%

10.41%

ENSEMBL

61.61%

95.26%

0.76

41.61%

73.41%

12.84%

7.09%

EXOGEAN

60.58%

94.73%

0.75

48.87%

76.29%

10.38%

4.16%

PAIRAGON+NSCAN_EST

56.22%

89.35%

0.70

41.11%

74.98%

16.06%

7.98%

Category 4

NSCAN

39.55%

78.69%

0.55

32.41%

65.25%

26.10%

14.69%

UCSC Tracks

ACEMBLY

91.94%

53.98%

0.70

65.51%

44.28%

2.15%

18.26%

ECgene

93.00%

38.68%

0.59

58.17%

34.83%

1.81%

34.31%

ENSgene

62.43%

95.27%

0.77

41.71%

72.65%

12.62%

7.10%

KNOWNgene

65.74%

91.82%

0.77

43.84%

74.57%

13.58%

2.74%

MGCgene

29.17%

96.73%

0.53

21.21%

74.10%

47.16%

2.22%

REFgene

57.51%

97.07%

0.74

38.35%

83.51%

19.28%

0.91%


Only programs that submitted 5' or 3' UTR exon annotations besides the CDS parts of exons are shown. CC, correlation coefficient.

Guig√≥ et al. Genome Biology 2006 7(Suppl 1):S2   doi:10.1186/gb-2006-7-s1-s2