The results for different ENCODE regions. The results presented are for the maximum allowed distance of 1,000 nucleotides between the predicted TSS and the reference one. AE is the average mismatch of predictions relative to the most close TSS location from the HAVANA annotation. It is divided by 1,000 to scale for the graph presentation. Results are presented for: all ENCODE regions; the training set; and the test set. Relation of scores to the predictor performance is as follows: for Se and ppv, the higher the score, the better the performance. The scores for these two measures range from 0 to 1. For AE, the lower the score, the better.
Bajic et al. Genome Biology 2006 7(Suppl 1):S3 doi:10.1186/gb-2006-7-s1-s3