This article is part of the supplement: EGASP '05: ENCODE Genome Annotation Assessment Project
Pairagon+N-SCAN_EST: a model-based gene annotation pipeline
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* Corresponding author: Michael R Brent brent@cse.wustl.edu
Genome Biology 2006, 7(Suppl 1):S5 doi:10.1186/gb-2006-7-s1-s5
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Proceedings
EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data Ernesto Picardi, Flavio Mignone, Graziano Pesole BMC Bioinformatics 2009, 10(Suppl 6):S10 (16 June 2009) |
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Method
CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo gene prediction Samuel S Gross, Chuong B Do, Marina Sirota, Serafim Batzoglou Genome Biology 2007, 8:R269 (20 December 2007) CONTRAST is a gene predictor that directly incorporates information from multiple alignments and uses discriminative machine learning techniques to give large improvements in prediction over previous methods. |
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Review
EGASP: the human ENCODE Genome Annotation Assessment Project Roderic Guigó, Paul Flicek, Josep F Abril, Alexandre Reymond, Julien Lagarde, France Denoeud, Stylianos Antonarakis, Michael Ashburner, Vladimir B Bajic, Ewan Birney, Robert Castelo, Eduardo Eyras, Catherine Ucla, Thomas R Gingeras, Jennifer Harrow, Tim Hubbard, Suzanna E Lewis, Martin G Reese Genome Biology 2006, 7(Suppl 1):S2 (7 August 2006) |
