Table 1

Prediction accuracy measures of mRNA/EST evidence based gene prediction methods

Name

NSn

NSp

ESn

ESp

ExT

TSn

TSp

TrG

GSn

GSp


Pairagon + N-SCAN_EST

87.6

92.8

76.6

89.0

7.2

39.3

60.6

1.3

69.6

61.7

ENSEMBL

90.2

92.0

77.5

82.7

7.8

39.8

54.6

1.5

71.6

67.3

ExoGean

84.2

94.3

79.3

83.5

9.8

42.5

52.4

2.3

63.2

80.8


The highest value for each measure is in bold. The columns are Nucleotide sensitivity (NSn) and specificity (NSp), Exon sensitivity (ESn) and specificity (ESp), Exons per transcript (ExT), Transcript sensitivity (TSn) and specificity (TSp), Transcripts per gene (TrG), and Gene sensitivity (GSn) and specificity (GSp).

Arumugam et al. Genome Biology 2006 7(Suppl 1):S5   doi:10.1186/gb-2006-7-s1-s5

Open Data