Table 2

Diagnostic for GENCODE genes missed by Exogean

Class of diagnostic

Number of cases

Description of the cause

1

33

Proteins matching multiple neighboring genes in clusters

2

8

GENCODE CDS size below 300 nucleotides

3

3

GENCODE CDS interrupted by the boundaries of the Encode region

4

2

Insufficient evidence to predict the gene

5

3

Protein evidence eliminated by Exogean

6

1

mRNA evidence eliminated by Exogean

7

2

Intron donor/acceptor sites not accepted by Exogean

8

1

mRNA evidence was misaligned with genomic DNA

Djebali et al. Genome Biology 2006 7(Suppl 1):S7   doi:10.1186/gb-2006-7-s1-s7