Table 3

Aligned fraction of the ENCODE regions

Mouse

Rat

Dog

Chicken

Frog

Opossum


Whole regions

15.2%

14.7%

28.8%

2.8%

2.0%

5.6%

Coding sequence

87.5%

85.0%

87.4%

53.0%

50.1%

76.1%


A comparison of the total fraction of bases aligned in the 44 ENCODE regions and the fraction of bases aligned in the coding portion of the GENCODE annotation for each of the informant sources in the MARS informant set. See Materials and methods for the alignment protocol.

Flicek and Brent Genome Biology 2006 7(Suppl 1):S8   doi:10.1186/gb-2006-7-s1-s8

Open Data