Figure 6.

Parsing sequence S into three non-overlapping intervals t0, t1 and t2 with the state assignments q1, q2 and q3, respectively. Position k marks an index in S. The dashed box highlights the evidence overlapping the first interval from position b0 to e0.

Allen et al. Genome Biology 2006 7(Suppl 1):S9   doi:10.1186/gb-2006-7-s1-s9