Table 1

Results for JIGSAW performance on the 31 ENCODE test regions when utilizing ab initio predictions and EST data

Gene Sn

Gene Sp

Exon Sn

Exon Sp

Nuc Sn

Nuc Sp

Missed Genes

Missed Exons

Inserted Exons


JIGSAW-GeneFinder4

22%

24%

59%

77%

77%

87%

15%

9%

9%

JIGSAW-GeneFinder6

25%

21%

67%

73%

87%

85%

6%

3%

13%

JIGSAW-non-Human-EST

39%

37%

70%

83%

88%

90%

7%

5%

7%

JIGSAW-non-Human-EST+

38%

34%

71%

80%

91%

87%

5%

3%

10%


The percentage of test genes and exons that do not overlap a prediction are listed in the Missed Genes and Missed Exons columns, respectively. The rightmost column shows the percentage of predicted exons inserted into true introns. See text for details. Nuc, nucleotide; Sn, sensitivity; Sp, specificity.

Allen et al. Genome Biology 2006 7(Suppl 1):S9   doi:10.1186/gb-2006-7-s1-s9

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