Table 3

Results of incorporating additional features into GeneZilla evaluated on RefSeq genes

Nuc

Exon

Gene


polyA

-1%

+1%

+2%

TATA+CAP

+0%

+0%

+1%

TATA (no CAP)

+0%

+0%

+0%

CAP (no TATA)

+0%

+0%

+0%

Branch point

+1%

+1%

+1%

Signal peptide

-1%

-1%

+0%

Intron phase

+1%

+1%

+0%

CpG islands

+0%

+0%

-1%

Isochore switching

+0%

+1%

+1%

UTR (trained on UTR)

-15%

-30%

-7%


Values are changes in nucleotide (Nuc), whole exon (Exon), or whole gene (Gene) accuracy, as measured by F-score. Individual features are described in the text.

Allen et al. Genome Biology 2006 7(Suppl 1):S9   doi:10.1186/gb-2006-7-s1-s9

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