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Performance data for annotating 44 ENCODE sequences by either mRNA and protein supported or ab initio predictions |
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| mRNA + protein supported, Sn/Sp (%) |
Ab initio, Sn/Sp (%) |
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| Nucleotide level |
91.14/89.54 |
88.44/74.46 |
| CDS EXACT |
77.19/86.48 |
67.54/64.22 |
| CDS OVERLAP |
90.60/91.4 |
85.00/71.71 |
| SoftBerry transcripts identical to HAVANA transcripts* |
56.37% (of 612) |
14.75% (of 590) |
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*Transcripts identical means that their CDS parts (including protein coding exons and coding parts of 5' and 3' exons) are identical; the percentage of SoftBerry transcripts is relative to the number of Softberry transcripts predicted in the corresponding category: mRNA supported, protein supported or ab initio. | ||
Solovyev et al. Genome Biology 2006 7(Suppl 1):S10 doi:10.1186/gb-2006-7-s1-s10 |
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