Figure 1.

Alignment for a coding splice acceptor site. The figure shows the central part of a typical alignment window used by the classifier component of DOGFISH. Codon boundaries on the exon side of the splice site are indicated with dots. This site has an alignment with all species except frog: hs; Homo sapiens: mm; Mus musculus: rn; Rattus norvegicus: cf; Canis familiaris: gg; Gallus gallus: dr; Danio rerio: fr; Fugu rubripes. The AG dinucleotide for the acceptor site itself is shown in bold.