Table 2

Error rates broken down by site type


Acceptors
Donors
Starts
Stops

True sites, false reject percentages
     Overall
4.45
4.08
17.61
15.86
     Coding
4.34
3.88
17.61
15.86
     Non-coding
7.48
10.00
NA
NA
Decoy sites, false accept percentages
     Overall
4.45
4.08
17.35
15.84
     Coding
2.34
1.08
23.19
2.92
     Non-coding intra
2.54
2.21
12.17
16.58
     Non-coding inter
8.00
8.31
18.05
16.07

The table shows the proportion (in the challenging test set) of various site types that received an incorrect classification. The classification threshold is adjusted to achieve roughly equal proportions of false positives and false negatives. NA: not applicable.

Carter and Durbin Genome Biology 2006 7(Suppl 1):S6   doi:10.1186/gb-2006-7-s1-s6