Table 3 |
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|
Results of incorporating additional features into GeneZilla evaluated on RefSeq genes |
|||
| Nuc |
Exon |
Gene |
|
|
|
|||
| polyA |
-1% |
+1% |
+2% |
| TATA+CAP |
+0% |
+0% |
+1% |
| TATA (no CAP) |
+0% |
+0% |
+0% |
| CAP (no TATA) |
+0% |
+0% |
+0% |
| Branch point |
+1% |
+1% |
+1% |
| Signal peptide |
-1% |
-1% |
+0% |
| Intron phase |
+1% |
+1% |
+0% |
| CpG islands |
+0% |
+0% |
-1% |
| Isochore switching |
+0% |
+1% |
+1% |
| UTR (trained on UTR) |
-15% |
-30% |
-7% |
|
|
|||
|
Values are changes in nucleotide (Nuc), whole exon (Exon), or whole gene (Gene) accuracy, as measured by F-score. Individual features are described in the text. |
|||
|
Allen et al. Genome Biology 2006 7(Suppl 1):S9 doi:10.1186/gb-2006-7-s1-s9 |
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