Genome Biology

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Creating a honey bee consensus gene set

Christine G Elsik*, Aaron J Mackey, Justin T Reese, Natalia V Milshina, David S Roos and George M Weinstock

  • * Corresponding author: Christine G Elsik c-elsik@tamu.edu

  • † Equal contributors

Genome Biology 2007, 8:R13 doi:10.1186/gb-2007-8-1-r13

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BioMed Central: 10 citations

Research article   Open Access Highly Accessed

The four hexamerin genes in the honey bee: structure, molecular evolution and function deduced from expression patterns in queens, workers and drones

Juliana R Martins, Francis MF Nunes, Alexandre S Cristino, Zilá LP Simões, Márcia MG Bitondi BMC Molecular Biology 2010, 11:23 (26 March 2010)

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KAIKObase: An integrated silkworm genome database and data mining tool

Michihiko Shimomura, Hiroshi Minami, Yoshitaka Suetsugu, Hajime Ohyanagi, Chikatada Satoh, Baltazar Antonio, Yoshiaki Nagamura, Keiko Kadono-Okuda, Hideyuki Kajiwara, Hideki Sezutsu, Javaregowda Nagaraju, Marian R Goldsmith, Qingyou Xia, Kimiko Yamamoto, Kazuei Mita BMC Genomics 2009, 10:486 (21 October 2009)

Research article   Open Access

Characterization of the bovine type I IFN locus: rearrangements, expansions, and novel subfamilies

Angela M Walker, R Michael Roberts BMC Genomics 2009, 10:187 (24 April 2009)

This article is part of a collection on Bovine: the companion...

Research article   Open Access

Characterization of the bovine pregnancy-associated glycoprotein gene family – analysis of gene sequences, regulatory regions within the promoter and expression of selected genes

Bhanu Telugu, Angela M Walker, Jonathan A Green BMC Genomics 2009, 10:185 (24 April 2009)

This article is part of a collection on Bovine: the companion...

Database   Open Access

EPIC-DB: a proteomics database for studying Apicomplexan organisms

Carlos J Madrid-Aliste, Joseph M Dybas, Ruth Angeletti, Louis M Weiss, Kami Kim, Istvan Simon, Andras Fiser BMC Genomics 2009, 10:38 (21 January 2009)

Research article   Open Access

nGASP – the nematode genome annotation assessment project

Avril Coghlan, Tristan J Fiedler, Sheldon J McKay, Paul Flicek, Todd W Harris, Darin Blasiar, Lincoln D Stein BMC Bioinformatics 2008, 9:549 (19 December 2008)

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Changes in protein expression during honey bee larval development

Queenie WT Chan, Leonard J Foster Genome Biology 2008, 9:R156 (29 October 2008)

Mass spectrometry-based quantitative proteomics was used to quantify nearly 800 proteins during the honey bee larval development.

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Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

Brian J Haas, Steven L Salzberg, Wei Zhu, Mihaela Pertea, Jonathan E Allen, Joshua Orvis, Owen White, C Robin Buell, Jennifer R Wortman Genome Biology 2008, 9:R7 (11 January 2008)

EVidenceModeler (EVM) is an automated annotation tool that predicts protein-coding regions, alternatively spliced transcripts and untranslated regions of eukaryotic genes.

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Comparative genomic analysis of fungal genomes reveals intron-rich ancestors

Jason E Stajich, Fred S Dietrich, Scott W Roy Genome Biology 2007, 8:R223 (19 October 2007)

Analysis of intron gain and loss in fungal genomes provides support for an intron-rich fungus-animal ancestor.

Research   Open Access

Computational and transcriptional evidence for microRNAs in the honey bee genome

Daniel B Weaver, Juan M Anzola, Jay D Evans, Jeffrey G Reid, Justin T Reese, Kevin L Childs, Evgeny M Zdobnov, Manoj P Samanta, Jonathan Miller, Christine G Elsik Genome Biology 2007, 8:R97 (1 June 2007)

A total of 68 non-redundant candidate honey bee miRNAs were identified computationally; several of them appear to have previously unrecognized orthologs in the Drosophila genome. Several miRNAs showed caste- or age-related differences in transcript abundance and are likely to be involved in regulating honey bee development.