Table 2

General Statistics for GLEAN and input gene prediction sets.


GLEAN
 Drosophila Ortholog
 Ensembl
 Evolutionary Conserved Core
 Fgenesh
 NCBI
Genes
 Count
 10,157
 5,842
 13,397
 10,960
 32,576
 9,414
All transcripts
 Count
 10,157
 8,875
 27,663
 10,960
 32,576
 9,744

Average length
 8,288
 4,053
 5,633
 6,573
 2,054
 9,909

Average coding length
 1,620
 1,136
 1,085
 1,430
 635
 1,728

Ave exons per
 6.4
 4.8
 6.2
 5.9
 3.5
 7.4
Complete transcripts
 Count
 9,722
 460
 2,923
 3,918
 31,003
 7,966

Average length
 8,415
 3,486
 2,180
 6,563
 2,096
 10,388

Average coding length
 1,644
 1,112
 631
 1,545
 631
 1,808

Ave exons per
 6.5
 5.2
 3.7
 6.3
 3.5
 7.8
Single exon transcripts
 Count
 705
 34
 421
 275
 882
 194

Average length
 925
 904
 186
 739
 615
 1,325
All exons
 Count
 64,975
 27,672
 13,2964
 60,601
 113,465
 70,627

Average length
 253
 239
 163
 243
 182
 234
Introns
 Count
 54,818
 21,254
 101,056
 49,587
 80,889
 61,107

Average length
 1,235
 700
 1,016
 1,089
 571
 1,287
Splice acceptors
 Count
 55,249
 26,532
 125,739
 55,192
 82,024
 61,903
Splice donors
 Count
 54,831
 26,444
 127,760
 53,653
 81,469
 62,762
Start codons
 Count
 9,726
 1,639
 8,110
 5,501
 31,441
 8,949
Stop codons
 Count
 10,144
 1,857
 6,153
 7,133
 31,996
 8,123

Elsik et al. Genome Biology 2007 8:R13   doi:10.1186/gb-2007-8-1-r13

Open Data