Table 2

General Statistics for GLEAN and input gene prediction sets.

GLEAN

Drosophila Ortholog

Ensembl

Evolutionary Conserved Core

Fgenesh

NCBI


Genes

Count

10,157

5,842

13,397

10,960

32,576

9,414

All transcripts

Count

10,157

8,875

27,663

10,960

32,576

9,744

Average length

8,288

4,053

5,633

6,573

2,054

9,909

Average coding length

1,620

1,136

1,085

1,430

635

1,728

Ave exons per

6.4

4.8

6.2

5.9

3.5

7.4

Complete transcripts

Count

9,722

460

2,923

3,918

31,003

7,966

Average length

8,415

3,486

2,180

6,563

2,096

10,388

Average coding length

1,644

1,112

631

1,545

631

1,808

Ave exons per

6.5

5.2

3.7

6.3

3.5

7.8

Single exon transcripts

Count

705

34

421

275

882

194

Average length

925

904

186

739

615

1,325

All exons

Count

64,975

27,672

13,2964

60,601

113,465

70,627

Average length

253

239

163

243

182

234

Introns

Count

54,818

21,254

101,056

49,587

80,889

61,107

Average length

1,235

700

1,016

1,089

571

1,287

Splice acceptors

Count

55,249

26,532

125,739

55,192

82,024

61,903

Splice donors

Count

54,831

26,444

127,760

53,653

81,469

62,762

Start codons

Count

9,726

1,639

8,110

5,501

31,441

8,949

Stop codons

Count

10,144

1,857

6,153

7,133

31,996

8,123


Elsik et al. Genome Biology 2007 8:R13   doi:10.1186/gb-2007-8-1-r13

Open Data