Table 2 |
|||||||
|
General Statistics for GLEAN and input gene prediction sets. |
|||||||
|
GLEAN |
Drosophila Ortholog |
Ensembl |
Evolutionary Conserved Core |
Fgenesh |
NCBI |
||
|
|
|||||||
|
Genes |
Count |
10,157 |
5,842 |
13,397 |
10,960 |
32,576 |
9,414 |
|
All transcripts |
Count |
10,157 |
8,875 |
27,663 |
10,960 |
32,576 |
9,744 |
|
Average length |
8,288 |
4,053 |
5,633 |
6,573 |
2,054 |
9,909 |
|
|
Average coding length |
1,620 |
1,136 |
1,085 |
1,430 |
635 |
1,728 |
|
|
Ave exons per |
6.4 |
4.8 |
6.2 |
5.9 |
3.5 |
7.4 |
|
|
Complete transcripts |
Count |
9,722 |
460 |
2,923 |
3,918 |
31,003 |
7,966 |
|
Average length |
8,415 |
3,486 |
2,180 |
6,563 |
2,096 |
10,388 |
|
|
Average coding length |
1,644 |
1,112 |
631 |
1,545 |
631 |
1,808 |
|
|
Ave exons per |
6.5 |
5.2 |
3.7 |
6.3 |
3.5 |
7.8 |
|
|
Single exon transcripts |
Count |
705 |
34 |
421 |
275 |
882 |
194 |
|
Average length |
925 |
904 |
186 |
739 |
615 |
1,325 |
|
|
All exons |
Count |
64,975 |
27,672 |
13,2964 |
60,601 |
113,465 |
70,627 |
|
Average length |
253 |
239 |
163 |
243 |
182 |
234 |
|
|
Introns |
Count |
54,818 |
21,254 |
101,056 |
49,587 |
80,889 |
61,107 |
|
Average length |
1,235 |
700 |
1,016 |
1,089 |
571 |
1,287 |
|
|
Splice acceptors |
Count |
55,249 |
26,532 |
125,739 |
55,192 |
82,024 |
61,903 |
|
Splice donors |
Count |
54,831 |
26,444 |
127,760 |
53,653 |
81,469 |
62,762 |
|
Start codons |
Count |
9,726 |
1,639 |
8,110 |
5,501 |
31,441 |
8,949 |
|
Stop codons |
Count |
10,144 |
1,857 |
6,153 |
7,133 |
31,996 |
8,123 |
|
|
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|
Elsik et al. Genome Biology 2007 8:R13 doi:10.1186/gb-2007-8-1-r13 |
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